miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 3' -59.5 NC_005262.1 + 49387 1.08 0.000468
Target:  5'- cGACAGGCAUGAGGCGACGCACCGCCAa -3'
miRNA:   3'- -CUGUCCGUACUCCGCUGCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 58689 0.8 0.056756
Target:  5'- uGGCAGGCAucgUGAaccgGGCG-CGCACCGCCGa -3'
miRNA:   3'- -CUGUCCGU---ACU----CCGCuGCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 20993 0.76 0.110788
Target:  5'- aGACAuGGCGUcGGGCGACGCGCCGg-- -3'
miRNA:   3'- -CUGU-CCGUAcUCCGCUGCGUGGCggu -5'
23895 3' -59.5 NC_005262.1 + 36127 0.74 0.149288
Target:  5'- cGAUAcGGC--GAGGCGA-GCACCGCCAg -3'
miRNA:   3'- -CUGU-CCGuaCUCCGCUgCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 25728 0.72 0.204828
Target:  5'- uGCAGGCc-GAGGCGAuCGCGCagGCCGg -3'
miRNA:   3'- cUGUCCGuaCUCCGCU-GCGUGg-CGGU- -5'
23895 3' -59.5 NC_005262.1 + 41564 0.72 0.210188
Target:  5'- cGGCcGGCGUG-GGCGGCGCgGCCGUgAg -3'
miRNA:   3'- -CUGuCCGUACuCCGCUGCG-UGGCGgU- -5'
23895 3' -59.5 NC_005262.1 + 53822 0.72 0.221269
Target:  5'- cACGGGCAUcGAGcUGACGCACCGgCGc -3'
miRNA:   3'- cUGUCCGUA-CUCcGCUGCGUGGCgGU- -5'
23895 3' -59.5 NC_005262.1 + 39940 0.72 0.232845
Target:  5'- gGACGGGCGgcaccgGcaaGGGCGGCGUGCCgGCCu -3'
miRNA:   3'- -CUGUCCGUa-----C---UCCGCUGCGUGG-CGGu -5'
23895 3' -59.5 NC_005262.1 + 14288 0.72 0.232845
Target:  5'- aGCAGGCccucGGCGaucgcgcugcGCGCACCGCCGg -3'
miRNA:   3'- cUGUCCGuacuCCGC----------UGCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 1738 0.7 0.284299
Target:  5'- cGCcguGuGCAgGAGGCGAUGCGCCGCa- -3'
miRNA:   3'- cUGu--C-CGUaCUCCGCUGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 49325 0.7 0.291328
Target:  5'- cGCAgGGCAUGAccgacgagcaGGCG-CGCGCCGCg- -3'
miRNA:   3'- cUGU-CCGUACU----------CCGCuGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 14307 0.7 0.298493
Target:  5'- gGACGGGa---GGGCGGCGgaACCGCCGa -3'
miRNA:   3'- -CUGUCCguacUCCGCUGCg-UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 45646 0.7 0.313229
Target:  5'- aGGCGGGCAcgcgcucccgguUGAGGCGcaGCGCuuCGUCGa -3'
miRNA:   3'- -CUGUCCGU------------ACUCCGC--UGCGugGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14561 0.7 0.313229
Target:  5'- cGGCAGGCGUcucgccGcGGCGcucacGCGCACCGCa- -3'
miRNA:   3'- -CUGUCCGUA------CuCCGC-----UGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 2658 0.7 0.313229
Target:  5'- uGCGcGGCGccGGGCGGCGUccugGCCGCCGu -3'
miRNA:   3'- cUGU-CCGUacUCCGCUGCG----UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 24205 0.69 0.320801
Target:  5'- aGGC-GGCA-GccGCGACGCugCGCCGg -3'
miRNA:   3'- -CUGuCCGUaCucCGCUGCGugGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 12947 0.69 0.328509
Target:  5'- --aGGGCGUGc-GCGACgGCAUCGCCGa -3'
miRNA:   3'- cugUCCGUACucCGCUG-CGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 53045 0.69 0.328509
Target:  5'- cACGGGCGUgGAGuaCGACGCGCUGaCCGg -3'
miRNA:   3'- cUGUCCGUA-CUCc-GCUGCGUGGC-GGU- -5'
23895 3' -59.5 NC_005262.1 + 60414 0.69 0.336354
Target:  5'- gGACGGGCAcGGGGCGcauaGCAUCGUg- -3'
miRNA:   3'- -CUGUCCGUaCUCCGCug--CGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 4811 0.69 0.336354
Target:  5'- cGACGGcGCggGAGGCG-UGagGCCGCCGg -3'
miRNA:   3'- -CUGUC-CGuaCUCCGCuGCg-UGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.