miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 3' -59.5 NC_005262.1 + 16583 0.67 0.429526
Target:  5'- aGCAGGCGcgugugcuggucGAGGCGGCGaagcaGCCGCg- -3'
miRNA:   3'- cUGUCCGUa-----------CUCCGCUGCg----UGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 60141 0.68 0.3776
Target:  5'- cGGCgaAGGCAUG-GGCGAaGUacccgGCCGCCGu -3'
miRNA:   3'- -CUG--UCCGUACuCCGCUgCG-----UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 24152 0.68 0.386248
Target:  5'- gGAUGGGCGgcagGAGGCGcACGC-CUGCa- -3'
miRNA:   3'- -CUGUCCGUa---CUCCGC-UGCGuGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 25457 0.68 0.395025
Target:  5'- --gAGGCGcugcgcGAGGCGAUGCcGCuCGCCAa -3'
miRNA:   3'- cugUCCGUa-----CUCCGCUGCG-UG-GCGGU- -5'
23895 3' -59.5 NC_005262.1 + 61166 0.68 0.395025
Target:  5'- cGGCGGGCGagcUGAcgGGCG-CGCGgCGCUAc -3'
miRNA:   3'- -CUGUCCGU---ACU--CCGCuGCGUgGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 31169 0.68 0.40393
Target:  5'- gGugAGaGCGUGAagaucGGCGACGCGacgaucacgcUCGCCGa -3'
miRNA:   3'- -CugUC-CGUACU-----CCGCUGCGU----------GGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 49710 0.68 0.40393
Target:  5'- cGAC-GGCGUGccGGGCGGCGaACCGgCGg -3'
miRNA:   3'- -CUGuCCGUAC--UCCGCUGCgUGGCgGU- -5'
23895 3' -59.5 NC_005262.1 + 12796 0.67 0.422115
Target:  5'- cGugA-GCAUuGGGCGGCGCGCaGCCGg -3'
miRNA:   3'- -CugUcCGUAcUCCGCUGCGUGgCGGU- -5'
23895 3' -59.5 NC_005262.1 + 48099 0.67 0.422115
Target:  5'- cGACGcGCgAUGAuGUGACGCGCCGCg- -3'
miRNA:   3'- -CUGUcCG-UACUcCGCUGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 57223 0.68 0.369084
Target:  5'- cGGC-GGCAUc--GCGACGCgcGCCGCCAa -3'
miRNA:   3'- -CUGuCCGUAcucCGCUGCG--UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 62570 0.69 0.344334
Target:  5'- ---uGGUcgGAGGCGGCGagcuuuGCCGCCu -3'
miRNA:   3'- cuguCCGuaCUCCGCUGCg-----UGGCGGu -5'
23895 3' -59.5 NC_005262.1 + 53045 0.69 0.328509
Target:  5'- cACGGGCGUgGAGuaCGACGCGCUGaCCGg -3'
miRNA:   3'- cUGUCCGUA-CUCc-GCUGCGUGGC-GGU- -5'
23895 3' -59.5 NC_005262.1 + 25728 0.72 0.204828
Target:  5'- uGCAGGCc-GAGGCGAuCGCGCagGCCGg -3'
miRNA:   3'- cUGUCCGuaCUCCGCU-GCGUGg-CGGU- -5'
23895 3' -59.5 NC_005262.1 + 53822 0.72 0.221269
Target:  5'- cACGGGCAUcGAGcUGACGCACCGgCGc -3'
miRNA:   3'- cUGUCCGUA-CUCcGCUGCGUGGCgGU- -5'
23895 3' -59.5 NC_005262.1 + 49325 0.7 0.291328
Target:  5'- cGCAgGGCAUGAccgacgagcaGGCG-CGCGCCGCg- -3'
miRNA:   3'- cUGU-CCGUACU----------CCGCuGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 14307 0.7 0.298493
Target:  5'- gGACGGGa---GGGCGGCGgaACCGCCGa -3'
miRNA:   3'- -CUGUCCguacUCCGCUGCg-UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 2658 0.7 0.313229
Target:  5'- uGCGcGGCGccGGGCGGCGUccugGCCGCCGu -3'
miRNA:   3'- cUGU-CCGUacUCCGCUGCG----UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14561 0.7 0.313229
Target:  5'- cGGCAGGCGUcucgccGcGGCGcucacGCGCACCGCa- -3'
miRNA:   3'- -CUGUCCGUA------CuCCGC-----UGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 24205 0.69 0.320801
Target:  5'- aGGC-GGCA-GccGCGACGCugCGCCGg -3'
miRNA:   3'- -CUGuCCGUaCucCGCUGCGugGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 12947 0.69 0.328509
Target:  5'- --aGGGCGUGc-GCGACgGCAUCGCCGa -3'
miRNA:   3'- cugUCCGUACucCGCUG-CGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.