miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 3' -59.5 NC_005262.1 + 206 0.68 0.412052
Target:  5'- cGCcGGCG-GGGGCGGCGgagccagacacgcUACCGCCGg -3'
miRNA:   3'- cUGuCCGUaCUCCGCUGC-------------GUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 1738 0.7 0.284299
Target:  5'- cGCcguGuGCAgGAGGCGAUGCGCCGCa- -3'
miRNA:   3'- cUGu--C-CGUaCUCCGCUGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 2658 0.7 0.313229
Target:  5'- uGCGcGGCGccGGGCGGCGUccugGCCGCCGu -3'
miRNA:   3'- cUGU-CCGUacUCCGCUGCG----UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 4811 0.69 0.336354
Target:  5'- cGACGGcGCggGAGGCG-UGagGCCGCCGg -3'
miRNA:   3'- -CUGUC-CGuaCUCCGCuGCg-UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 10251 0.66 0.480462
Target:  5'- gGACaAGGCGagcggcgacaucaagGAGGCGACugaaugGCACCGCg- -3'
miRNA:   3'- -CUG-UCCGUa--------------CUCCGCUG------CGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 11641 0.67 0.43139
Target:  5'- --gAGGCcgGGGuaGuuGCGCGCCGCCu -3'
miRNA:   3'- cugUCCGuaCUCcgC--UGCGUGGCGGu -5'
23895 3' -59.5 NC_005262.1 + 12554 0.66 0.518729
Target:  5'- cGGCAGGUcgc-GGCGGCGCucgucgagcugcuGCUGCCGc -3'
miRNA:   3'- -CUGUCCGuacuCCGCUGCG-------------UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 12796 0.67 0.422115
Target:  5'- cGugA-GCAUuGGGCGGCGCGCaGCCGg -3'
miRNA:   3'- -CugUcCGUAcUCCGCUGCGUGgCGGU- -5'
23895 3' -59.5 NC_005262.1 + 12947 0.69 0.328509
Target:  5'- --aGGGCGUGc-GCGACgGCAUCGCCGa -3'
miRNA:   3'- cugUCCGUACucCGCUG-CGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14028 0.67 0.469641
Target:  5'- cGGCAgcGGCcgGAgccucgGGCGcGgGCGCCGCCGg -3'
miRNA:   3'- -CUGU--CCGuaCU------CCGC-UgCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14288 0.72 0.232845
Target:  5'- aGCAGGCccucGGCGaucgcgcugcGCGCACCGCCGg -3'
miRNA:   3'- cUGUCCGuacuCCGC----------UGCGUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14307 0.7 0.298493
Target:  5'- gGACGGGa---GGGCGGCGgaACCGCCGa -3'
miRNA:   3'- -CUGUCCguacUCCGCUGCg-UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 14561 0.7 0.313229
Target:  5'- cGGCAGGCGUcucgccGcGGCGcucacGCGCACCGCa- -3'
miRNA:   3'- -CUGUCCGUA------CuCCGC-----UGCGUGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 16065 0.67 0.422115
Target:  5'- cGGCGGcGCAccagauacAGGCGGCGaGCCGCCGc -3'
miRNA:   3'- -CUGUC-CGUac------UCCGCUGCgUGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 16583 0.67 0.429526
Target:  5'- aGCAGGCGcgugugcuggucGAGGCGGCGaagcaGCCGCg- -3'
miRNA:   3'- cUGUCCGUa-----------CUCCGCUGCg----UGGCGgu -5'
23895 3' -59.5 NC_005262.1 + 16870 0.66 0.530034
Target:  5'- uGCAGGCGcccGGCcGCGCGCCggGCCGc -3'
miRNA:   3'- cUGUCCGUacuCCGcUGCGUGG--CGGU- -5'
23895 3' -59.5 NC_005262.1 + 17128 0.67 0.422115
Target:  5'- cGGCGGGCGUcGGuGcCGGCGCcauGCUGCCGc -3'
miRNA:   3'- -CUGUCCGUAcUC-C-GCUGCG---UGGCGGU- -5'
23895 3' -59.5 NC_005262.1 + 17558 0.66 0.479473
Target:  5'- aGGC-GGCAgccGcGGCGGCGCGCgaaGCCGa -3'
miRNA:   3'- -CUGuCCGUa--CuCCGCUGCGUGg--CGGU- -5'
23895 3' -59.5 NC_005262.1 + 20993 0.76 0.110788
Target:  5'- aGACAuGGCGUcGGGCGACGCGCCGg-- -3'
miRNA:   3'- -CUGU-CCGUAcUCCGCUGCGUGGCggu -5'
23895 3' -59.5 NC_005262.1 + 22126 0.67 0.459913
Target:  5'- -cCGGuGCcgGcGGCGAUgacgGCGCCGCCGg -3'
miRNA:   3'- cuGUC-CGuaCuCCGCUG----CGUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.