miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 5' -56.1 NC_005262.1 + 49423 1.08 0.001112
Target:  5'- gCACAUGCGGCUUAUCACCGCCGCCAGu -3'
miRNA:   3'- -GUGUACGCCGAAUAGUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 41663 0.78 0.135118
Target:  5'- -uCcgGCGGCgccGUCAUCGCCGCCGGc -3'
miRNA:   3'- guGuaCGCCGaa-UAGUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 22523 0.77 0.161885
Target:  5'- cCACGcGCGGCcgaaucugcgugAUCGCCGCCGUCAGg -3'
miRNA:   3'- -GUGUaCGCCGaa----------UAGUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 30949 0.77 0.177466
Target:  5'- gCACGUGCGGgccgaaacCUUGUCGCCgacGUCGCCGGa -3'
miRNA:   3'- -GUGUACGCC--------GAAUAGUGG---CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 22130 0.73 0.290724
Target:  5'- uGCcgGCGGCgaugaCGgCGCCGCCGGa -3'
miRNA:   3'- gUGuaCGCCGaaua-GUgGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 32908 0.73 0.30548
Target:  5'- gCGCGaGCGGC--GUCACCauccgGCCGCCGGc -3'
miRNA:   3'- -GUGUaCGCCGaaUAGUGG-----CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 3157 0.73 0.30548
Target:  5'- uGCccGCGGUgc-UCGCCGCuCGCCAGc -3'
miRNA:   3'- gUGuaCGCCGaauAGUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 54359 0.72 0.328679
Target:  5'- gCACaAUGCGGgCUUcgCAcCCGCuCGCCGGc -3'
miRNA:   3'- -GUG-UACGCC-GAAuaGU-GGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 16079 0.71 0.387746
Target:  5'- aUACAgGCGGCga---GCCGCCGCCc- -3'
miRNA:   3'- -GUGUaCGCCGaauagUGGCGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 47215 0.71 0.387746
Target:  5'- ----cGCGGCacUGUCGCCGCCGCa-- -3'
miRNA:   3'- guguaCGCCGa-AUAGUGGCGGCGguc -5'
23895 5' -56.1 NC_005262.1 + 28615 0.71 0.396735
Target:  5'- cCACGcgGCGGUcgUGaccUCAUUGCCGCCAGc -3'
miRNA:   3'- -GUGUa-CGCCGa-AU---AGUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 63573 0.71 0.405857
Target:  5'- cCGCcgGCGGUagcgUGUCuggcuCCGCCGCCc- -3'
miRNA:   3'- -GUGuaCGCCGa---AUAGu----GGCGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 22797 0.7 0.442659
Target:  5'- ----cGCGGUgccaucagcagcgagCGCCGCCGCCAGa -3'
miRNA:   3'- guguaCGCCGaaua-----------GUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 39584 0.7 0.453375
Target:  5'- gGCGUGcCGGCgcagcGUCGCgGCUGCCGc -3'
miRNA:   3'- gUGUAC-GCCGaa---UAGUGgCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 32864 0.7 0.461257
Target:  5'- gCACGUGCGGCgccgagcuguUCGCCGCgucgaaCGUCGGc -3'
miRNA:   3'- -GUGUACGCCGaau-------AGUGGCG------GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 24750 0.7 0.463238
Target:  5'- gGCGUGCGGCcgaagUGgauucagCACCGCggcgaGCCGGg -3'
miRNA:   3'- gUGUACGCCGa----AUa------GUGGCGg----CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 15301 0.7 0.473213
Target:  5'- uUACcUGCGGCUgccGUCG-CGCCGCCc- -3'
miRNA:   3'- -GUGuACGCCGAa--UAGUgGCGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 9121 0.7 0.473213
Target:  5'- cCGCA-GCGGCUaugAggACCGgCGCCGGg -3'
miRNA:   3'- -GUGUaCGCCGAa--UagUGGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 19978 0.69 0.483295
Target:  5'- gGCccGCGGCcgUGUCGCCGCgauCGCCc- -3'
miRNA:   3'- gUGuaCGCCGa-AUAGUGGCG---GCGGuc -5'
23895 5' -56.1 NC_005262.1 + 38540 0.69 0.491434
Target:  5'- aCACGgucGCGGUgacgaucggCACCGCCGCgGGc -3'
miRNA:   3'- -GUGUa--CGCCGaaua-----GUGGCGGCGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.