miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 5' -56.1 NC_005262.1 + 13722 0.66 0.69759
Target:  5'- gACGUGCuGGUcgGUgGCaCGCCguGCCAGg -3'
miRNA:   3'- gUGUACG-CCGaaUAgUG-GCGG--CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 47712 0.68 0.593129
Target:  5'- cCGCGccggGCGGCggcUCGCCgccuguaucuggugcGCCGCCGGc -3'
miRNA:   3'- -GUGUa---CGCCGaauAGUGG---------------CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 49730 0.67 0.621469
Target:  5'- aACcgGCGGCcgaagccgCACCGaCGCCGGc -3'
miRNA:   3'- gUGuaCGCCGaaua----GUGGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 24341 0.67 0.632394
Target:  5'- gACAUGCGGCUcugcGUCGgCG-CGCCuGa -3'
miRNA:   3'- gUGUACGCCGAa---UAGUgGCgGCGGuC- -5'
23895 5' -56.1 NC_005262.1 + 12121 0.67 0.632394
Target:  5'- -cCGUGCGcGCgagcagAUCGCCGCgcuggagaGCCAGg -3'
miRNA:   3'- guGUACGC-CGaa----UAGUGGCGg-------CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 14062 0.67 0.64332
Target:  5'- ----aGUGGCccaaCGCCGCCGCCGu -3'
miRNA:   3'- guguaCGCCGaauaGUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 45118 0.67 0.64332
Target:  5'- gCGgGUGCcGCgaa-CACCGCgCGCCAGa -3'
miRNA:   3'- -GUgUACGcCGaauaGUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 30131 0.66 0.686818
Target:  5'- -uCGUGCcGCUgcugGUCGCCGaagCGCCGGc -3'
miRNA:   3'- guGUACGcCGAa---UAGUGGCg--GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 60376 0.66 0.686818
Target:  5'- ----gGCGGCgaagGUCGCCGgCCGCaAGa -3'
miRNA:   3'- guguaCGCCGaa--UAGUGGC-GGCGgUC- -5'
23895 5' -56.1 NC_005262.1 + 16865 0.68 0.56716
Target:  5'- aCugAUGCaGGCgcccgGCCGCgCGCCGGg -3'
miRNA:   3'- -GugUACG-CCGaauagUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 16349 0.68 0.556422
Target:  5'- gGCucgGCGcGCUgAUCGgCGCCGCCGc -3'
miRNA:   3'- gUGua-CGC-CGAaUAGUgGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 12561 0.69 0.524591
Target:  5'- uCGCG-GCGGCgcucGUCgagcugcuGCUGCCGCCGGc -3'
miRNA:   3'- -GUGUaCGCCGaa--UAG--------UGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 47215 0.71 0.387746
Target:  5'- ----cGCGGCacUGUCGCCGCCGCa-- -3'
miRNA:   3'- guguaCGCCGa-AUAGUGGCGGCGguc -5'
23895 5' -56.1 NC_005262.1 + 63573 0.71 0.405857
Target:  5'- cCGCcgGCGGUagcgUGUCuggcuCCGCCGCCc- -3'
miRNA:   3'- -GUGuaCGCCGa---AUAGu----GGCGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 32864 0.7 0.461257
Target:  5'- gCACGUGCGGCgccgagcuguUCGCCGCgucgaaCGUCGGc -3'
miRNA:   3'- -GUGUACGCCGaau-------AGUGGCG------GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 24750 0.7 0.463238
Target:  5'- gGCGUGCGGCcgaagUGgauucagCACCGCggcgaGCCGGg -3'
miRNA:   3'- gUGUACGCCGa----AUa------GUGGCGg----CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 9121 0.7 0.473213
Target:  5'- cCGCA-GCGGCUaugAggACCGgCGCCGGg -3'
miRNA:   3'- -GUGUaCGCCGAa--UagUGGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 38540 0.69 0.491434
Target:  5'- aCACGgucGCGGUgacgaucggCACCGCCGCgGGc -3'
miRNA:   3'- -GUGUa--CGCCGaaua-----GUGGCGGCGgUC- -5'
23895 5' -56.1 NC_005262.1 + 47608 0.69 0.501696
Target:  5'- cCGCAUGaagaacgauccgGGCUUcUCGCgGCUGCCGGa -3'
miRNA:   3'- -GUGUACg-----------CCGAAuAGUGgCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 12320 0.69 0.524591
Target:  5'- gGCAUGCGGCUcg-UGCCGCagCGCgCGGc -3'
miRNA:   3'- gUGUACGCCGAauaGUGGCG--GCG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.