miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23895 5' -56.1 NC_005262.1 + 1044 0.68 0.588785
Target:  5'- cCACGUGCcgaauGCUgcggCGCUGaCCGCCAGc -3'
miRNA:   3'- -GUGUACGc----CGAaua-GUGGC-GGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 1091 0.67 0.604012
Target:  5'- uGCGUGCGcgauuacccaucgucGCgc-UCcccuGCCGCCGCCGGg -3'
miRNA:   3'- gUGUACGC---------------CGaauAG----UGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 1217 0.67 0.654235
Target:  5'- aGCAgaagGCGGCaaagcUCGCCGCCuccgaCCAGg -3'
miRNA:   3'- gUGUa---CGCCGaau--AGUGGCGGc----GGUC- -5'
23895 5' -56.1 NC_005262.1 + 2428 0.69 0.524591
Target:  5'- gCGCA-GCGGCUUcacGUCGuuCUGgCGCCAGa -3'
miRNA:   3'- -GUGUaCGCCGAA---UAGU--GGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 3157 0.73 0.30548
Target:  5'- uGCccGCGGUgc-UCGCCGCuCGCCAGc -3'
miRNA:   3'- gUGuaCGCCGaauAGUGGCG-GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 3181 0.66 0.69759
Target:  5'- nGCGUGCgcauGGCgu-UCGCCGUgcccuguauCGCCGGg -3'
miRNA:   3'- gUGUACG----CCGaauAGUGGCG---------GCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 9121 0.7 0.473213
Target:  5'- cCGCA-GCGGCUaugAggACCGgCGCCGGg -3'
miRNA:   3'- -GUGUaCGCCGAa--UagUGGCgGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 10831 0.67 0.610553
Target:  5'- -cCAUGCccGGCUcgagCACCuuGCCGCCGGc -3'
miRNA:   3'- guGUACG--CCGAaua-GUGG--CGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 12121 0.67 0.632394
Target:  5'- -cCGUGCGcGCgagcagAUCGCCGCgcuggagaGCCAGg -3'
miRNA:   3'- guGUACGC-CGaa----UAGUGGCGg-------CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 12320 0.69 0.524591
Target:  5'- gGCAUGCGGCUcg-UGCCGCagCGCgCGGc -3'
miRNA:   3'- gUGUACGCCGAauaGUGGCG--GCG-GUC- -5'
23895 5' -56.1 NC_005262.1 + 12561 0.69 0.524591
Target:  5'- uCGCG-GCGGCgcucGUCgagcugcuGCUGCCGCCGGc -3'
miRNA:   3'- -GUGUaCGCCGaa--UAG--------UGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 13391 0.66 0.675994
Target:  5'- gCGCuccGCGGCgcugAUCGCCGCgcgguucgcguCGCCAc -3'
miRNA:   3'- -GUGua-CGCCGaa--UAGUGGCG-----------GCGGUc -5'
23895 5' -56.1 NC_005262.1 + 13478 0.66 0.686818
Target:  5'- ----cGCGGCggg-CGCUGCgGCCGGc -3'
miRNA:   3'- guguaCGCCGaauaGUGGCGgCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 13722 0.66 0.69759
Target:  5'- gACGUGCuGGUcgGUgGCaCGCCguGCCAGg -3'
miRNA:   3'- gUGUACG-CCGaaUAgUG-GCGG--CGGUC- -5'
23895 5' -56.1 NC_005262.1 + 13931 0.67 0.632394
Target:  5'- gGCcgGCuGaGCUgcuuccggUACCGCCGCCGGc -3'
miRNA:   3'- gUGuaCG-C-CGAaua-----GUGGCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 14062 0.67 0.64332
Target:  5'- ----aGUGGCccaaCGCCGCCGCCGu -3'
miRNA:   3'- guguaCGCCGaauaGUGGCGGCGGUc -5'
23895 5' -56.1 NC_005262.1 + 14069 0.67 0.599655
Target:  5'- --gGUGCGGCUU----CgGCCGCCGGu -3'
miRNA:   3'- gugUACGCCGAAuaguGgCGGCGGUC- -5'
23895 5' -56.1 NC_005262.1 + 14606 0.66 0.708299
Target:  5'- aGCAUGcCGGag-AUCAUCGCCGUg-- -3'
miRNA:   3'- gUGUAC-GCCgaaUAGUGGCGGCGguc -5'
23895 5' -56.1 NC_005262.1 + 15301 0.7 0.473213
Target:  5'- uUACcUGCGGCUgccGUCG-CGCCGCCc- -3'
miRNA:   3'- -GUGuACGCCGAa--UAGUgGCGGCGGuc -5'
23895 5' -56.1 NC_005262.1 + 16079 0.71 0.387746
Target:  5'- aUACAgGCGGCga---GCCGCCGCCc- -3'
miRNA:   3'- -GUGUaCGCCGaauagUGGCGGCGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.