Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
239 | 5' | -59.1 | AC_000008.1 | + | 17664 | 0.66 | 0.35308 |
Target: 5'- aCGAUGcuGGGGUGGUAGCgcgcuguuGGCAGCAc -3' miRNA: 3'- gGCUGCcuCCUCGUCGUCG--------UCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 15084 | 0.66 | 0.37848 |
Target: 5'- gCGGCGc-GGAagagaacuccaacGCGGCAGCcGCGGCAa -3' miRNA: 3'- gGCUGCcuCCU-------------CGUCGUCGuCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 16326 | 0.66 | 0.370467 |
Target: 5'- gCGACGaGcGGccgccGCAGCAGCcGCGGCc -3' miRNA: 3'- gGCUGC-CuCCu----CGUCGUCGuCGUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 12649 | 0.66 | 0.366943 |
Target: 5'- aCCGGCugguGGGGGAugugcgcgaggccGUGGCGcagcgugagcgcgcGCAGCAGCAg -3' miRNA: 3'- -GGCUG----CCUCCU-------------CGUCGU--------------CGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 9401 | 0.66 | 0.361701 |
Target: 5'- gCGGCGGuGGGGgAGgGGggacaCGGCGGCGa -3' miRNA: 3'- gGCUGCCuCCUCgUCgUC-----GUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 8624 | 0.67 | 0.312182 |
Target: 5'- cCCGcCGGgagaGGGGGCAGgGGCAcGuCGGCGc -3' miRNA: 3'- -GGCuGCC----UCCUCGUCgUCGU-C-GUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 11080 | 0.67 | 0.328098 |
Target: 5'- gCGGCaaGAGcaaGAGCAGCGGCAGaCAuGCAg -3' miRNA: 3'- gGCUGc-CUC---CUCGUCGUCGUC-GU-CGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 25005 | 0.67 | 0.336277 |
Target: 5'- gCCGACuuGGAGGAGCGacGCaaacuaaugauGGCcGCAGUg -3' miRNA: 3'- -GGCUG--CCUCCUCGU--CG-----------UCGuCGUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 5872 | 0.67 | 0.344605 |
Target: 5'- -aGugGGAGGGGUAGCGGUcGUuGUc -3' miRNA: 3'- ggCugCCUCCUCGUCGUCGuCGuCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 28438 | 0.67 | 0.328098 |
Target: 5'- -aGGCGGuAGGuguGguGCAGCGGcCGGUg -3' miRNA: 3'- ggCUGCC-UCCu--CguCGUCGUC-GUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 15288 | 0.67 | 0.312182 |
Target: 5'- cUCGACcucGGGuugcGCAGCGGgGGCGGCAg -3' miRNA: 3'- -GGCUGcc-UCCu---CGUCGUCgUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13958 | 0.68 | 0.261126 |
Target: 5'- gUGugGGAGGAcgauacuCGGCAGacgaCAGCAGCGu -3' miRNA: 3'- gGCugCCUCCUc------GUCGUC----GUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 16752 | 0.68 | 0.29686 |
Target: 5'- cCCGuCGccuGGGcGCGGUAGCGuGCAGCAg -3' miRNA: 3'- -GGCuGCc--UCCuCGUCGUCGU-CGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 26466 | 0.68 | 0.29686 |
Target: 5'- gCCGGCGGcgccugAGGAGCGGaGGUuGUAGCc -3' miRNA: 3'- -GGCUGCC------UCCUCGUCgUCGuCGUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 31413 | 0.68 | 0.274982 |
Target: 5'- gCGACcauuaGAGGuGCGGCGGCAGCcacaguuagGGCu -3' miRNA: 3'- gGCUGc----CUCCuCGUCGUCGUCG---------UCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13861 | 0.68 | 0.263851 |
Target: 5'- aUGcCGGAGGcAgguuuuuuucgcgcuGCGGCuGCAGCAGCGa -3' miRNA: 3'- gGCuGCCUCC-U---------------CGUCGuCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 9569 | 0.68 | 0.289421 |
Target: 5'- uUGGCGGGGG-GCuGCcauGCGGCAGgGa -3' miRNA: 3'- gGCUGCCUCCuCGuCGu--CGUCGUCgU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 24599 | 0.68 | 0.282128 |
Target: 5'- gCCGAgCGGAcaAGCAGCuGGCcuuGCGGCAg -3' miRNA: 3'- -GGCU-GCCUccUCGUCG-UCGu--CGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 12326 | 0.69 | 0.228974 |
Target: 5'- cCCGGCGGuGcGGGCGGCGcuGCAGagcCAGCc -3' miRNA: 3'- -GGCUGCCuC-CUCGUCGU--CGUC---GUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13251 | 0.69 | 0.243969 |
Target: 5'- gCGA-GGAGGAGCGcauuuugcgcuacguGCAGCAG-AGCGu -3' miRNA: 3'- gGCUgCCUCCUCGU---------------CGUCGUCgUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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