Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
239 | 5' | -59.1 | AC_000008.1 | + | 2143 | 1.1 | 0.000163 |
Target: 5'- aCCGACGGAGGAGCAGCAGCAGCAGCAg -3' miRNA: 3'- -GGCUGCCUCCUCGUCGUCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 26697 | 0.85 | 0.01631 |
Target: 5'- aCCGGCGGc--AGCGGCAGCGGCAGCAa -3' miRNA: 3'- -GGCUGCCuccUCGUCGUCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 33293 | 0.84 | 0.018956 |
Target: 5'- uCCuGCaGGAcGGAGCGGCGGCGGCAGCAg -3' miRNA: 3'- -GGcUG-CCU-CCUCGUCGUCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 26247 | 0.81 | 0.030618 |
Target: 5'- uCCGugGGuGGcGGCGGCAGCuGCAGCu -3' miRNA: 3'- -GGCugCCuCC-UCGUCGUCGuCGUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 15046 | 0.76 | 0.07414 |
Target: 5'- -gGGCGGGGGuggcgcaGGCGGCAGCAaCAGCAg -3' miRNA: 3'- ggCUGCCUCC-------UCGUCGUCGUcGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 33197 | 0.73 | 0.11467 |
Target: 5'- -gGGCGGuGGuGCuGCAGCAGCGcGCGa -3' miRNA: 3'- ggCUGCCuCCuCGuCGUCGUCGU-CGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 2169 | 0.73 | 0.124885 |
Target: 5'- ----aGGAGGaAGCcaGGCGGCGGCGGCAg -3' miRNA: 3'- ggcugCCUCC-UCG--UCGUCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 3859 | 0.73 | 0.132158 |
Target: 5'- gCgGGCGGuGGcuGCAGCGGCugaAGCGGCGg -3' miRNA: 3'- -GgCUGCCuCCu-CGUCGUCG---UCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 9736 | 0.71 | 0.160781 |
Target: 5'- aCCGugGc--GGGCGGCAGCGgGCGGCGg -3' miRNA: 3'- -GGCugCcucCUCGUCGUCGU-CGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 11132 | 0.7 | 0.197002 |
Target: 5'- aCCGcgucaGGAGGGGCGacauccgcgguugacGCGGCAGCAGa- -3' miRNA: 3'- -GGCug---CCUCCUCGU---------------CGUCGUCGUCgu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 12326 | 0.69 | 0.228974 |
Target: 5'- cCCGGCGGuGcGGGCGGCGcuGCAGagcCAGCc -3' miRNA: 3'- -GGCUGCCuC-CUCGUCGU--CGUC---GUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13251 | 0.69 | 0.243969 |
Target: 5'- gCGA-GGAGGAGCGcauuuugcgcuacguGCAGCAG-AGCGu -3' miRNA: 3'- gGCUgCCUCCUCGU---------------CGUCGUCgUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13958 | 0.68 | 0.261126 |
Target: 5'- gUGugGGAGGAcgauacuCGGCAGacgaCAGCAGCGu -3' miRNA: 3'- gGCugCCUCCUc------GUCGUC----GUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 13861 | 0.68 | 0.263851 |
Target: 5'- aUGcCGGAGGcAgguuuuuuucgcgcuGCGGCuGCAGCAGCGa -3' miRNA: 3'- gGCuGCCUCC-U---------------CGUCGuCGUCGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 31413 | 0.68 | 0.274982 |
Target: 5'- gCGACcauuaGAGGuGCGGCGGCAGCcacaguuagGGCu -3' miRNA: 3'- gGCUGc----CUCCuCGUCGUCGUCG---------UCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 24599 | 0.68 | 0.282128 |
Target: 5'- gCCGAgCGGAcaAGCAGCuGGCcuuGCGGCAg -3' miRNA: 3'- -GGCU-GCCUccUCGUCG-UCGu--CGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 9569 | 0.68 | 0.289421 |
Target: 5'- uUGGCGGGGG-GCuGCcauGCGGCAGgGa -3' miRNA: 3'- gGCUGCCUCCuCGuCGu--CGUCGUCgU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 26466 | 0.68 | 0.29686 |
Target: 5'- gCCGGCGGcgccugAGGAGCGGaGGUuGUAGCc -3' miRNA: 3'- -GGCUGCC------UCCUCGUCgUCGuCGUCGu -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 16752 | 0.68 | 0.29686 |
Target: 5'- cCCGuCGccuGGGcGCGGUAGCGuGCAGCAg -3' miRNA: 3'- -GGCuGCc--UCCuCGUCGUCGU-CGUCGU- -5' |
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239 | 5' | -59.1 | AC_000008.1 | + | 8624 | 0.67 | 0.312182 |
Target: 5'- cCCGcCGGgagaGGGGGCAGgGGCAcGuCGGCGc -3' miRNA: 3'- -GGCuGCC----UCCUCGUCgUCGU-C-GUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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