miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
239 5' -59.1 AC_000008.1 + 2143 1.1 0.000163
Target:  5'- aCCGACGGAGGAGCAGCAGCAGCAGCAg -3'
miRNA:   3'- -GGCUGCCUCCUCGUCGUCGUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 2169 0.73 0.124885
Target:  5'- ----aGGAGGaAGCcaGGCGGCGGCGGCAg -3'
miRNA:   3'- ggcugCCUCC-UCG--UCGUCGUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 3859 0.73 0.132158
Target:  5'- gCgGGCGGuGGcuGCAGCGGCugaAGCGGCGg -3'
miRNA:   3'- -GgCUGCCuCCu-CGUCGUCG---UCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 5872 0.67 0.344605
Target:  5'- -aGugGGAGGGGUAGCGGUcGUuGUc -3'
miRNA:   3'- ggCugCCUCCUCGUCGUCGuCGuCGu -5'
239 5' -59.1 AC_000008.1 + 8624 0.67 0.312182
Target:  5'- cCCGcCGGgagaGGGGGCAGgGGCAcGuCGGCGc -3'
miRNA:   3'- -GGCuGCC----UCCUCGUCgUCGU-C-GUCGU- -5'
239 5' -59.1 AC_000008.1 + 9401 0.66 0.361701
Target:  5'- gCGGCGGuGGGGgAGgGGggacaCGGCGGCGa -3'
miRNA:   3'- gGCUGCCuCCUCgUCgUC-----GUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 9569 0.68 0.289421
Target:  5'- uUGGCGGGGG-GCuGCcauGCGGCAGgGa -3'
miRNA:   3'- gGCUGCCUCCuCGuCGu--CGUCGUCgU- -5'
239 5' -59.1 AC_000008.1 + 9736 0.71 0.160781
Target:  5'- aCCGugGc--GGGCGGCAGCGgGCGGCGg -3'
miRNA:   3'- -GGCugCcucCUCGUCGUCGU-CGUCGU- -5'
239 5' -59.1 AC_000008.1 + 11080 0.67 0.328098
Target:  5'- gCGGCaaGAGcaaGAGCAGCGGCAGaCAuGCAg -3'
miRNA:   3'- gGCUGc-CUC---CUCGUCGUCGUC-GU-CGU- -5'
239 5' -59.1 AC_000008.1 + 11132 0.7 0.197002
Target:  5'- aCCGcgucaGGAGGGGCGacauccgcgguugacGCGGCAGCAGa- -3'
miRNA:   3'- -GGCug---CCUCCUCGU---------------CGUCGUCGUCgu -5'
239 5' -59.1 AC_000008.1 + 12326 0.69 0.228974
Target:  5'- cCCGGCGGuGcGGGCGGCGcuGCAGagcCAGCc -3'
miRNA:   3'- -GGCUGCCuC-CUCGUCGU--CGUC---GUCGu -5'
239 5' -59.1 AC_000008.1 + 12649 0.66 0.366943
Target:  5'- aCCGGCugguGGGGGAugugcgcgaggccGUGGCGcagcgugagcgcgcGCAGCAGCAg -3'
miRNA:   3'- -GGCUG----CCUCCU-------------CGUCGU--------------CGUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 13251 0.69 0.243969
Target:  5'- gCGA-GGAGGAGCGcauuuugcgcuacguGCAGCAG-AGCGu -3'
miRNA:   3'- gGCUgCCUCCUCGU---------------CGUCGUCgUCGU- -5'
239 5' -59.1 AC_000008.1 + 13861 0.68 0.263851
Target:  5'- aUGcCGGAGGcAgguuuuuuucgcgcuGCGGCuGCAGCAGCGa -3'
miRNA:   3'- gGCuGCCUCC-U---------------CGUCGuCGUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 13958 0.68 0.261126
Target:  5'- gUGugGGAGGAcgauacuCGGCAGacgaCAGCAGCGu -3'
miRNA:   3'- gGCugCCUCCUc------GUCGUC----GUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 15046 0.76 0.07414
Target:  5'- -gGGCGGGGGuggcgcaGGCGGCAGCAaCAGCAg -3'
miRNA:   3'- ggCUGCCUCC-------UCGUCGUCGUcGUCGU- -5'
239 5' -59.1 AC_000008.1 + 15084 0.66 0.37848
Target:  5'- gCGGCGc-GGAagagaacuccaacGCGGCAGCcGCGGCAa -3'
miRNA:   3'- gGCUGCcuCCU-------------CGUCGUCGuCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 15288 0.67 0.312182
Target:  5'- cUCGACcucGGGuugcGCAGCGGgGGCGGCAg -3'
miRNA:   3'- -GGCUGcc-UCCu---CGUCGUCgUCGUCGU- -5'
239 5' -59.1 AC_000008.1 + 16326 0.66 0.370467
Target:  5'- gCGACGaGcGGccgccGCAGCAGCcGCGGCc -3'
miRNA:   3'- gGCUGC-CuCCu----CGUCGUCGuCGUCGu -5'
239 5' -59.1 AC_000008.1 + 16752 0.68 0.29686
Target:  5'- cCCGuCGccuGGGcGCGGUAGCGuGCAGCAg -3'
miRNA:   3'- -GGCuGCc--UCCuCGUCGUCGU-CGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.