Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23912 | 3' | -54 | NC_005262.1 | + | 37710 | 1.11 | 0.001098 |
Target: 5'- aGCACGGCACGUUGAACAGGACAGGCAg -3' miRNA: 3'- -CGUGCCGUGCAACUUGUCCUGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 40484 | 0.75 | 0.316105 |
Target: 5'- uGCGCGGCgccuugauGCGcUUGAuggcgaacgACGGGGCGGGCGu -3' miRNA: 3'- -CGUGCCG--------UGC-AACU---------UGUCCUGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 24952 | 0.74 | 0.381248 |
Target: 5'- cGCGCGGCGCGcccagcuuCAGGAaCAGGCc -3' miRNA: 3'- -CGUGCCGUGCaacuu---GUCCU-GUCCGu -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 9607 | 0.73 | 0.401172 |
Target: 5'- cGCugGaGCACGcgcucGGACAGGACcGGCGc -3' miRNA: 3'- -CGugC-CGUGCaa---CUUGUCCUGuCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 20962 | 0.72 | 0.4449 |
Target: 5'- uGCACGGCAgGUUGAGCucgagcuuuuccuGaGACAuGGCGu -3' miRNA: 3'- -CGUGCCGUgCAACUUGu------------C-CUGU-CCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 14024 | 0.72 | 0.489113 |
Target: 5'- gGCGCGGCAgCGgccgGAGCcucGGGcGCGGGCGc -3' miRNA: 3'- -CGUGCCGU-GCaa--CUUG---UCC-UGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 12932 | 0.71 | 0.49945 |
Target: 5'- uGCGCGGCGCGcUGA--AGGGCGugcgcgacGGCAu -3' miRNA: 3'- -CGUGCCGUGCaACUugUCCUGU--------CCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 36740 | 0.71 | 0.520404 |
Target: 5'- cGCACGaacgcguaGCGCGUgaggucGAugGCGGGGCGGGCu -3' miRNA: 3'- -CGUGC--------CGUGCAa-----CU--UGUCCUGUCCGu -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 19102 | 0.71 | 0.520404 |
Target: 5'- cGCGCGGCgaugccACGUUcGGAuCGGGcGCGGGCGc -3' miRNA: 3'- -CGUGCCG------UGCAA-CUU-GUCC-UGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 59957 | 0.7 | 0.563267 |
Target: 5'- -aGCGGCACGUcacGcGCGGGGCGcucGGCAc -3' miRNA: 3'- cgUGCCGUGCAa--CuUGUCCUGU---CCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 40666 | 0.7 | 0.585062 |
Target: 5'- aGCGCGGUGCGgcGAACGGGugGaaCAg -3' miRNA: 3'- -CGUGCCGUGCaaCUUGUCCugUccGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 13797 | 0.7 | 0.596023 |
Target: 5'- gGCGcCGGCGCGgcuucaucGGCGGGAgCGGGCGc -3' miRNA: 3'- -CGU-GCCGUGCaac-----UUGUCCU-GUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 28918 | 0.7 | 0.607015 |
Target: 5'- cGCGauccaGGCACG----GCAGGAaCAGGCAg -3' miRNA: 3'- -CGUg----CCGUGCaacuUGUCCU-GUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 13987 | 0.69 | 0.618028 |
Target: 5'- cGCGCGGC-CGaucGGGCcGGACGGuGCAg -3' miRNA: 3'- -CGUGCCGuGCaa-CUUGuCCUGUC-CGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 62201 | 0.69 | 0.640082 |
Target: 5'- -aACGGCACGUUGAugccgaucuuucucuCGGGAUugcccucguuccaGGGCGu -3' miRNA: 3'- cgUGCCGUGCAACUu--------------GUCCUG-------------UCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 34127 | 0.69 | 0.662108 |
Target: 5'- gGUugGGCGgGcUGcGCGGGcGCGGGCGg -3' miRNA: 3'- -CGugCCGUgCaACuUGUCC-UGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 17109 | 0.69 | 0.662108 |
Target: 5'- cGCGCGGCGC--UGAcuGCAucGGCGGGCGu -3' miRNA: 3'- -CGUGCCGUGcaACU--UGUc-CUGUCCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 20593 | 0.68 | 0.673083 |
Target: 5'- cGCGCGGCGCGcc--GCAGGGCuguuGCGu -3' miRNA: 3'- -CGUGCCGUGCaacuUGUCCUGuc--CGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 43848 | 0.68 | 0.694907 |
Target: 5'- cGCGCGGCgguGCGcc-GGCAGGACcucGGCGc -3' miRNA: 3'- -CGUGCCG---UGCaacUUGUCCUGu--CCGU- -5' |
|||||||
23912 | 3' | -54 | NC_005262.1 | + | 27738 | 0.68 | 0.716488 |
Target: 5'- aGUGCGGCAgGUUG-GCAGuacCGGGCGu -3' miRNA: 3'- -CGUGCCGUgCAACuUGUCcu-GUCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home