miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 3' -54 NC_005262.1 + 32565 0.66 0.817529
Target:  5'- cUugGGCGCGUcGAuc--GACAGGCGc -3'
miRNA:   3'- cGugCCGUGCAaCUugucCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 36740 0.71 0.520404
Target:  5'- cGCACGaacgcguaGCGCGUgaggucGAugGCGGGGCGGGCu -3'
miRNA:   3'- -CGUGC--------CGUGCAa-----CU--UGUCCUGUCCGu -5'
23912 3' -54 NC_005262.1 + 14024 0.72 0.489113
Target:  5'- gGCGCGGCAgCGgccgGAGCcucGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCGU-GCaa--CUUG---UCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 37710 1.11 0.001098
Target:  5'- aGCACGGCACGUUGAACAGGACAGGCAg -3'
miRNA:   3'- -CGUGCCGUGCAACUUGUCCUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 29455 0.67 0.77885
Target:  5'- uCACGGCGuCGaUGAacgccugauaguGCAGGGC-GGCGa -3'
miRNA:   3'- cGUGCCGU-GCaACU------------UGUCCUGuCCGU- -5'
23912 3' -54 NC_005262.1 + 58685 0.67 0.768771
Target:  5'- cGCAUGGCAgGcaucgUGAACcGGGCGcGCAc -3'
miRNA:   3'- -CGUGCCGUgCa----ACUUGuCCUGUcCGU- -5'
23912 3' -54 NC_005262.1 + 21822 0.67 0.748201
Target:  5'- uGCGCGGCG-GUgu--CAGGcaACAGGCGc -3'
miRNA:   3'- -CGUGCCGUgCAacuuGUCC--UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 47244 0.67 0.727158
Target:  5'- cCGCGGC-CG-UGAACGGGAgcGGCu -3'
miRNA:   3'- cGUGCCGuGCaACUUGUCCUguCCGu -5'
23912 3' -54 NC_005262.1 + 34127 0.69 0.662108
Target:  5'- gGUugGGCGgGcUGcGCGGGcGCGGGCGg -3'
miRNA:   3'- -CGugCCGUgCaACuUGUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 59957 0.7 0.563267
Target:  5'- -aGCGGCACGUcacGcGCGGGGCGcucGGCAc -3'
miRNA:   3'- cgUGCCGUGCAa--CuUGUCCUGU---CCGU- -5'
23912 3' -54 NC_005262.1 + 13987 0.69 0.618028
Target:  5'- cGCGCGGC-CGaucGGGCcGGACGGuGCAg -3'
miRNA:   3'- -CGUGCCGuGCaa-CUUGuCCUGUC-CGU- -5'
23912 3' -54 NC_005262.1 + 17109 0.69 0.662108
Target:  5'- cGCGCGGCGC--UGAcuGCAucGGCGGGCGu -3'
miRNA:   3'- -CGUGCCGUGcaACU--UGUc-CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 3306 0.66 0.815664
Target:  5'- cGCGCGGCccgGCGUcucgcccUGAucgcGCAGcgucauguagagcGACAGGCGc -3'
miRNA:   3'- -CGUGCCG---UGCA-------ACU----UGUC-------------CUGUCCGU- -5'
23912 3' -54 NC_005262.1 + 13797 0.7 0.596023
Target:  5'- gGCGcCGGCGCGgcuucaucGGCGGGAgCGGGCGc -3'
miRNA:   3'- -CGU-GCCGUGCaac-----UUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 17819 0.67 0.77885
Target:  5'- aCGCGGCuguCGUcccaacccucGAGCGGGAaCAGGUAc -3'
miRNA:   3'- cGUGCCGu--GCAa---------CUUGUCCU-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 27738 0.68 0.716488
Target:  5'- aGUGCGGCAgGUUG-GCAGuacCGGGCGu -3'
miRNA:   3'- -CGUGCCGUgCAACuUGUCcu-GUCCGU- -5'
23912 3' -54 NC_005262.1 + 40666 0.7 0.585062
Target:  5'- aGCGCGGUGCGgcGAACGGGugGaaCAg -3'
miRNA:   3'- -CGUGCCGUGCaaCUUGUCCugUccGU- -5'
23912 3' -54 NC_005262.1 + 19102 0.71 0.520404
Target:  5'- cGCGCGGCgaugccACGUUcGGAuCGGGcGCGGGCGc -3'
miRNA:   3'- -CGUGCCG------UGCAA-CUU-GUCC-UGUCCGU- -5'
23912 3' -54 NC_005262.1 + 26519 0.67 0.77885
Target:  5'- cGC-CGcGCACGUUGAACGuGGCucGGCc -3'
miRNA:   3'- -CGuGC-CGUGCAACUUGUcCUGu-CCGu -5'
23912 3' -54 NC_005262.1 + 38441 0.67 0.768771
Target:  5'- cGCAcCGGCuguugGCGUUGAACAGcGCGuGGUc -3'
miRNA:   3'- -CGU-GCCG-----UGCAACUUGUCcUGU-CCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.