miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 50791 0.7 0.234581
Target:  5'- --cGCGCUCCUGCgcgUacacccacgucacgcGCGgGUCGCGGu -3'
miRNA:   3'- cuaCGCGGGGACGa--A---------------CGCgCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 52319 0.69 0.250116
Target:  5'- --cGCGgCCCaugUGCUcGCGCGCgagCGCGGu -3'
miRNA:   3'- cuaCGCgGGG---ACGAaCGCGCG---GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 13464 0.69 0.256313
Target:  5'- --gGCGCUucguCCUGCgcgGCggGCGCUGCGGc -3'
miRNA:   3'- cuaCGCGG----GGACGaa-CG--CGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 61724 0.69 0.262636
Target:  5'- --gGCGCgCUCUGCUUacuucGcCGCGUCGUGGa -3'
miRNA:   3'- cuaCGCG-GGGACGAA-----C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 7213 0.69 0.262636
Target:  5'- gGAUGCGCaCCUGCUUGUucugGuUGCCcugGCGGa -3'
miRNA:   3'- -CUACGCGgGGACGAACG----C-GCGG---CGCC- -5'
23912 5' -62.2 NC_005262.1 + 7249 0.68 0.27566
Target:  5'- uGAUGCGCCCCUc---GCGCuGCuCGaCGGa -3'
miRNA:   3'- -CUACGCGGGGAcgaaCGCG-CG-GC-GCC- -5'
23912 5' -62.2 NC_005262.1 + 12322 0.68 0.289196
Target:  5'- cAUGCgGCUCgUGCcgcaGCGCGCgGCGGc -3'
miRNA:   3'- cUACG-CGGGgACGaa--CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 4741 0.68 0.289196
Target:  5'- uGAUGCGCUCCUGCaccUGCuucaCGCGGu -3'
miRNA:   3'- -CUACGCGGGGACGa--ACGcgcgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 46732 0.68 0.289196
Target:  5'- --cGCGCCUaucgGCgccgUGCGCGCgacgagcuCGCGGa -3'
miRNA:   3'- cuaCGCGGGga--CGa---ACGCGCG--------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 56528 0.68 0.296158
Target:  5'- --gGCGacaCCCCUGCUgGUGUGCCGUu- -3'
miRNA:   3'- cuaCGC---GGGGACGAaCGCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 61767 0.68 0.296158
Target:  5'- --cGCGCCCCgucgaGCagcacgaaGCaGCGCCGUGGc -3'
miRNA:   3'- cuaCGCGGGGa----CGaa------CG-CGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 30128 0.68 0.296158
Target:  5'- cGAUcGUGCCgCUGCUggucGCcgaaGCGCCgGCGGa -3'
miRNA:   3'- -CUA-CGCGGgGACGAa---CG----CGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 35856 0.68 0.303249
Target:  5'- ---cCGCCCagaUGUUUGUGCGCgGCGa -3'
miRNA:   3'- cuacGCGGGg--ACGAACGCGCGgCGCc -5'
23912 5' -62.2 NC_005262.1 + 12489 0.68 0.306122
Target:  5'- gGAUGCGCCCaucuggucgagcgGCaUGCGCagcaGCCgGCGGc -3'
miRNA:   3'- -CUACGCGGGga-----------CGaACGCG----CGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 46516 0.68 0.309742
Target:  5'- --cGaCGCCCCUGCccGCGCaGCagcccagCGCGGc -3'
miRNA:   3'- cuaC-GCGGGGACGaaCGCG-CG-------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 43200 0.68 0.31047
Target:  5'- ---aCGCaacagCCCUGCg-GCGCGCCGCGc -3'
miRNA:   3'- cuacGCG-----GGGACGaaCGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 1119 0.68 0.31047
Target:  5'- --cGcCGCCuCUUGCUcUGCGgcCGCUGCGGg -3'
miRNA:   3'- cuaC-GCGG-GGACGA-ACGC--GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 60981 0.67 0.325302
Target:  5'- cGAUGCGUUCCUGUcgGcCGUGCCGa-- -3'
miRNA:   3'- -CUACGCGGGGACGaaC-GCGCGGCgcc -5'
23912 5' -62.2 NC_005262.1 + 13687 0.67 0.325302
Target:  5'- --aGCGCUcggccggcuUCUGUUcGCGCGgCGCGGg -3'
miRNA:   3'- cuaCGCGG---------GGACGAaCGCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 5090 0.67 0.330616
Target:  5'- --aGCGCCUCggGCaugccgccagcuugUUGCGCGCucgcaaCGCGGg -3'
miRNA:   3'- cuaCGCGGGGa-CG--------------AACGCGCG------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.