miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 36908 0.96 0.003988
Target:  5'- cGACAACGGACGCGCCGGCC-ACUCGAu -3'
miRNA:   3'- -CUGUUGCCUGCGCGGCCGGgUGAGCU- -5'
23915 3' -60 NC_005262.1 + 61696 0.78 0.083797
Target:  5'- uGACGAUcaGGGCGCGCCgGGUUCGCUCGGc -3'
miRNA:   3'- -CUGUUG--CCUGCGCGG-CCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 51180 0.78 0.088501
Target:  5'- aGGCAGCcgacGACGCGgCGGCCCGCUgGAg -3'
miRNA:   3'- -CUGUUGc---CUGCGCgGCCGGGUGAgCU- -5'
23915 3' -60 NC_005262.1 + 7534 0.77 0.096032
Target:  5'- -uCGGCGG-CGCGUCGGCgCGCUCGAc -3'
miRNA:   3'- cuGUUGCCuGCGCGGCCGgGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 28100 0.76 0.125726
Target:  5'- cGACGccggaGCGGAUGCuuCCGuGCCCGCUCGAc -3'
miRNA:   3'- -CUGU-----UGCCUGCGc-GGC-CGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 39953 0.75 0.13618
Target:  5'- cGGCAAgGGcgGCGUGCCGGCCUACguugcCGAg -3'
miRNA:   3'- -CUGUUgCC--UGCGCGGCCGGGUGa----GCU- -5'
23915 3' -60 NC_005262.1 + 308 0.75 0.139838
Target:  5'- aGGCGuCGGGCaCGCCaGCCCAUUCGAg -3'
miRNA:   3'- -CUGUuGCCUGcGCGGcCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 34748 0.75 0.155388
Target:  5'- aAC-ACGGugcgcguCGUGCCGGCgCCGCUCGAg -3'
miRNA:   3'- cUGuUGCCu------GCGCGGCCG-GGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 32787 0.74 0.159513
Target:  5'- cGACAccgGCGG-CGCGCCGGCCauCGCguUCGAc -3'
miRNA:   3'- -CUGU---UGCCuGCGCGGCCGG--GUG--AGCU- -5'
23915 3' -60 NC_005262.1 + 13478 0.74 0.172488
Target:  5'- cGCGGCGGGCGCugcgGCCGGCUC-CUCa- -3'
miRNA:   3'- cUGUUGCCUGCG----CGGCCGGGuGAGcu -5'
23915 3' -60 NC_005262.1 + 30675 0.72 0.240067
Target:  5'- cGACAGCGGACGCuggaCGGC--GCUCGAc -3'
miRNA:   3'- -CUGUUGCCUGCGcg--GCCGggUGAGCU- -5'
23915 3' -60 NC_005262.1 + 30207 0.71 0.254735
Target:  5'- cGACuGCGGugGCcucgaucgugaucucGCCGGCCUcgaGCUCGu -3'
miRNA:   3'- -CUGuUGCCugCG---------------CGGCCGGG---UGAGCu -5'
23915 3' -60 NC_005262.1 + 50584 0.71 0.264918
Target:  5'- --uGGCGGACGCGCCGGUUgCGCgcaCGGa -3'
miRNA:   3'- cugUUGCCUGCGCGGCCGG-GUGa--GCU- -5'
23915 3' -60 NC_005262.1 + 5134 0.71 0.271448
Target:  5'- cGCGACGGGCgGCGCUGauCCUGCUCGGc -3'
miRNA:   3'- cUGUUGCCUG-CGCGGCc-GGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 43850 0.71 0.284895
Target:  5'- cGCGGCGG-UGCGCCGGCaggaC-CUCGGc -3'
miRNA:   3'- cUGUUGCCuGCGCGGCCGg---GuGAGCU- -5'
23915 3' -60 NC_005262.1 + 41544 0.71 0.284895
Target:  5'- cGACGGCGuGAUGCGCaGGCCgGC-CGGc -3'
miRNA:   3'- -CUGUUGC-CUGCGCGgCCGGgUGaGCU- -5'
23915 3' -60 NC_005262.1 + 10624 0.7 0.305319
Target:  5'- cGACGACGGACGCGaagGGCggguugccgaucgCCGCgUCGAa -3'
miRNA:   3'- -CUGUUGCCUGCGCgg-CCG-------------GGUG-AGCU- -5'
23915 3' -60 NC_005262.1 + 53118 0.7 0.306043
Target:  5'- cGCAugcaGGAUGCGuUCGGCCUGCUCGu -3'
miRNA:   3'- cUGUug--CCUGCGC-GGCCGGGUGAGCu -5'
23915 3' -60 NC_005262.1 + 49496 0.7 0.306769
Target:  5'- -cCGGCGGuGCGCGCagcgcgaucgccgagGGCCUGCUCGAg -3'
miRNA:   3'- cuGUUGCC-UGCGCGg--------------CCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 35632 0.7 0.320798
Target:  5'- cGGCAACGGcACGCgGCgGGCgaugggCUACUCGGu -3'
miRNA:   3'- -CUGUUGCC-UGCG-CGgCCG------GGUGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.