miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 11383 0.68 0.411242
Target:  5'- cACGACGuuCGCGCgCGGCuCCACgcCGAa -3'
miRNA:   3'- cUGUUGCcuGCGCG-GCCG-GGUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 48106 0.69 0.33608
Target:  5'- cGAUGAUGuGACGCGCCGcGCgCaagaGCUCGGc -3'
miRNA:   3'- -CUGUUGC-CUGCGCGGC-CG-Gg---UGAGCU- -5'
23915 3' -60 NC_005262.1 + 5181 0.69 0.343917
Target:  5'- cGGCGucGCGGGCGCggGCgCGGCCgGCgCGAc -3'
miRNA:   3'- -CUGU--UGCCUGCG--CG-GCCGGgUGaGCU- -5'
23915 3' -60 NC_005262.1 + 22222 0.69 0.368211
Target:  5'- cGACAagcucACGGcCGCGCCG-CCCACgcCGGc -3'
miRNA:   3'- -CUGU-----UGCCuGCGCGGCcGGGUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 49338 0.69 0.368211
Target:  5'- cGACGAgcaGGcGCGCGCCGcGCUCGCUgaCGAc -3'
miRNA:   3'- -CUGUUg--CC-UGCGCGGC-CGGGUGA--GCU- -5'
23915 3' -60 NC_005262.1 + 42773 0.69 0.376566
Target:  5'- cGCGACGGACG-GCCaGCCCuACaUCGu -3'
miRNA:   3'- cUGUUGCCUGCgCGGcCGGG-UG-AGCu -5'
23915 3' -60 NC_005262.1 + 54164 0.68 0.384195
Target:  5'- aACGGCGaGAUcgucaagGCGCCGGUCCugUcCGAg -3'
miRNA:   3'- cUGUUGC-CUG-------CGCGGCCGGGugA-GCU- -5'
23915 3' -60 NC_005262.1 + 46655 0.68 0.385049
Target:  5'- cGACAGCGGcaGCaugGCGCCGgcaccgacGCCCGC-CGAu -3'
miRNA:   3'- -CUGUUGCC--UG---CGCGGC--------CGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 60822 0.68 0.385049
Target:  5'- cGCA--GGAguuUGCGCCGGCCUACgCGAu -3'
miRNA:   3'- cUGUugCCU---GCGCGGCCGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 51111 0.7 0.32761
Target:  5'- aGGCGAuCGugcucGACGCGCCGGUCgacaaggCGCUCGAc -3'
miRNA:   3'- -CUGUU-GC-----CUGCGCGGCCGG-------GUGAGCU- -5'
23915 3' -60 NC_005262.1 + 35632 0.7 0.320798
Target:  5'- cGGCAACGGcACGCgGCgGGCgaugggCUACUCGGu -3'
miRNA:   3'- -CUGUUGCC-UGCG-CGgCCG------GGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 49496 0.7 0.306769
Target:  5'- -cCGGCGGuGCGCGCagcgcgaucgccgagGGCCUGCUCGAg -3'
miRNA:   3'- cuGUUGCC-UGCGCGg--------------CCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 51180 0.78 0.088501
Target:  5'- aGGCAGCcgacGACGCGgCGGCCCGCUgGAg -3'
miRNA:   3'- -CUGUUGc---CUGCGCgGCCGGGUGAgCU- -5'
23915 3' -60 NC_005262.1 + 7534 0.77 0.096032
Target:  5'- -uCGGCGG-CGCGUCGGCgCGCUCGAc -3'
miRNA:   3'- cuGUUGCCuGCGCGGCCGgGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 308 0.75 0.139838
Target:  5'- aGGCGuCGGGCaCGCCaGCCCAUUCGAg -3'
miRNA:   3'- -CUGUuGCCUGcGCGGcCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 34748 0.75 0.155388
Target:  5'- aAC-ACGGugcgcguCGUGCCGGCgCCGCUCGAg -3'
miRNA:   3'- cUGuUGCCu------GCGCGGCCG-GGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 32787 0.74 0.159513
Target:  5'- cGACAccgGCGG-CGCGCCGGCCauCGCguUCGAc -3'
miRNA:   3'- -CUGU---UGCCuGCGCGGCCGG--GUG--AGCU- -5'
23915 3' -60 NC_005262.1 + 30675 0.72 0.240067
Target:  5'- cGACAGCGGACGCuggaCGGC--GCUCGAc -3'
miRNA:   3'- -CUGUUGCCUGCGcg--GCCGggUGAGCU- -5'
23915 3' -60 NC_005262.1 + 5134 0.71 0.271448
Target:  5'- cGCGACGGGCgGCGCUGauCCUGCUCGGc -3'
miRNA:   3'- cUGUUGCCUG-CGCGGCc-GGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 43850 0.71 0.284895
Target:  5'- cGCGGCGG-UGCGCCGGCaggaC-CUCGGc -3'
miRNA:   3'- cUGUUGCCuGCGCGGCCGg---GuGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.