miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 308 0.75 0.139838
Target:  5'- aGGCGuCGGGCaCGCCaGCCCAUUCGAg -3'
miRNA:   3'- -CUGUuGCCUGcGCGGcCGGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 479 0.67 0.438512
Target:  5'- cGGCGACGcGGCGCGCgUGuuCCACgUCGAc -3'
miRNA:   3'- -CUGUUGC-CUGCGCG-GCcgGGUG-AGCU- -5'
23915 3' -60 NC_005262.1 + 1046 0.67 0.466787
Target:  5'- cGACAAUaGGCGCGaUCGGCCCggaGC-CGAc -3'
miRNA:   3'- -CUGUUGcCUGCGC-GGCCGGG---UGaGCU- -5'
23915 3' -60 NC_005262.1 + 5075 0.67 0.486151
Target:  5'- cGGCGGCGG-CGCGUgCGaCCgGCUCGGc -3'
miRNA:   3'- -CUGUUGCCuGCGCG-GCcGGgUGAGCU- -5'
23915 3' -60 NC_005262.1 + 5134 0.71 0.271448
Target:  5'- cGCGACGGGCgGCGCUGauCCUGCUCGGc -3'
miRNA:   3'- cUGUUGCCUG-CGCGGCc-GGGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 5181 0.69 0.343917
Target:  5'- cGGCGucGCGGGCGCggGCgCGGCCgGCgCGAc -3'
miRNA:   3'- -CUGU--UGCCUGCG--CG-GCCGGgUGaGCU- -5'
23915 3' -60 NC_005262.1 + 7534 0.77 0.096032
Target:  5'- -uCGGCGG-CGCGUCGGCgCGCUCGAc -3'
miRNA:   3'- cuGUUGCCuGCGCGGCCGgGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 9122 0.67 0.447829
Target:  5'- cGCAGCGGcuaugaggACcgGCGCCGGgCCGgUCGGa -3'
miRNA:   3'- cUGUUGCC--------UG--CGCGGCCgGGUgAGCU- -5'
23915 3' -60 NC_005262.1 + 10234 0.67 0.438512
Target:  5'- -uCAGCGcGuGCGCGCCGaGCaCCAuCUCGGg -3'
miRNA:   3'- cuGUUGC-C-UGCGCGGC-CG-GGU-GAGCU- -5'
23915 3' -60 NC_005262.1 + 10624 0.7 0.305319
Target:  5'- cGACGACGGACGCGaagGGCggguugccgaucgCCGCgUCGAa -3'
miRNA:   3'- -CUGUUGCCUGCGCgg-CCG-------------GGUG-AGCU- -5'
23915 3' -60 NC_005262.1 + 11383 0.68 0.411242
Target:  5'- cACGACGuuCGCGCgCGGCuCCACgcCGAa -3'
miRNA:   3'- cUGUUGCcuGCGCG-GCCG-GGUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 13478 0.74 0.172488
Target:  5'- cGCGGCGGGCGCugcgGCCGGCUC-CUCa- -3'
miRNA:   3'- cUGUUGCCUGCG----CGGCCGGGuGAGcu -5'
23915 3' -60 NC_005262.1 + 13532 0.66 0.546326
Target:  5'- cGGC-GCGGGCGCGCCcucguugcggcGGUCgAuCUCGGc -3'
miRNA:   3'- -CUGuUGCCUGCGCGG-----------CCGGgU-GAGCU- -5'
23915 3' -60 NC_005262.1 + 13644 0.67 0.486151
Target:  5'- cGCAgGCGGuCGCGCagcucaGGCUCGCUCc- -3'
miRNA:   3'- cUGU-UGCCuGCGCGg-----CCGGGUGAGcu -5'
23915 3' -60 NC_005262.1 + 15119 0.67 0.486151
Target:  5'- -cCGGCuGGaACGCGCUGGCCgGCagcuugUCGAg -3'
miRNA:   3'- cuGUUG-CC-UGCGCGGCCGGgUG------AGCU- -5'
23915 3' -60 NC_005262.1 + 15489 0.67 0.47642
Target:  5'- uACAcCGaGCGCGgCGGCUCGCUCa- -3'
miRNA:   3'- cUGUuGCcUGCGCgGCCGGGUGAGcu -5'
23915 3' -60 NC_005262.1 + 16980 0.67 0.486151
Target:  5'- -uCGGCGaGCGCGCgGGCCUGCacgUCGGu -3'
miRNA:   3'- cuGUUGCcUGCGCGgCCGGGUG---AGCU- -5'
23915 3' -60 NC_005262.1 + 17127 0.66 0.495976
Target:  5'- -uCGGCGGGCGUcgguGCCGGCgCCAUgcugccgcugUCGGc -3'
miRNA:   3'- cuGUUGCCUGCG----CGGCCG-GGUG----------AGCU- -5'
23915 3' -60 NC_005262.1 + 20741 0.69 0.33608
Target:  5'- cGCGGCGcGCgGUGCCGGCCgGgUCGAu -3'
miRNA:   3'- cUGUUGCcUG-CGCGGCCGGgUgAGCU- -5'
23915 3' -60 NC_005262.1 + 20868 0.66 0.515886
Target:  5'- uACGACGcGCGCGCCGGaCgACgacgCGAc -3'
miRNA:   3'- cUGUUGCcUGCGCGGCCgGgUGa---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.