Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23921 | 5' | -53.2 | NC_005262.1 | + | 12807 | 0.66 | 0.850849 |
Target: 5'- ----gGCGGCGCGCAgCCgGCGCg-- -3' miRNA: 3'- gcaagUGCUGCGUGUaGGaCGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 13704 | 0.66 | 0.850849 |
Target: 5'- uGUUCgcGCGGCGCGgGUUCggucgGCGCa-- -3' miRNA: 3'- gCAAG--UGCUGCGUgUAGGa----CGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 34120 | 0.66 | 0.842138 |
Target: 5'- aCGUUCgACGAgCGCGCA-CC-GCGCa-- -3' miRNA: 3'- -GCAAG-UGCU-GCGUGUaGGaCGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 16561 | 0.66 | 0.833201 |
Target: 5'- cCGUUCACGGC-CGCGgaugCCgagcagGCGCg-- -3' miRNA: 3'- -GCAAGUGCUGcGUGUa---GGa-----CGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 3794 | 0.66 | 0.827733 |
Target: 5'- gGUUCACGccGCGCAuCAUCUcgaggaucgggugcaUGCGCg-- -3' miRNA: 3'- gCAAGUGC--UGCGU-GUAGG---------------ACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 22627 | 0.66 | 0.824046 |
Target: 5'- gCGaUCGCGGCgGUGCccUCCUGCGCg-- -3' miRNA: 3'- -GCaAGUGCUG-CGUGu-AGGACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 40219 | 0.66 | 0.824046 |
Target: 5'- -uUUCACGGCG-AUcUCCUGCGCc-- -3' miRNA: 3'- gcAAGUGCUGCgUGuAGGACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 24865 | 0.66 | 0.814686 |
Target: 5'- aGUgcUCgGCGAUGUGCAUCCgccgGCGCg-- -3' miRNA: 3'- gCA--AG-UGCUGCGUGUAGGa---CGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 60057 | 0.66 | 0.814686 |
Target: 5'- ---aCcCGGCGUuCAUCCUGCGCa-- -3' miRNA: 3'- gcaaGuGCUGCGuGUAGGACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 51935 | 0.67 | 0.802224 |
Target: 5'- uGUUCACGACGgacaagguggaggcCGCucgcgcgcgCCUGCGCUc- -3' miRNA: 3'- gCAAGUGCUGC--------------GUGua-------GGACGCGAua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 48174 | 0.67 | 0.795385 |
Target: 5'- gCGUUCAgccgcgccuCGAUGCGC-UCCUGcCGCa-- -3' miRNA: 3'- -GCAAGU---------GCUGCGUGuAGGAC-GCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 50769 | 0.67 | 0.795385 |
Target: 5'- aCGcgCACcgcguagcccuuGGCGCGC-UCCUGCGCg-- -3' miRNA: 3'- -GCaaGUG------------CUGCGUGuAGGACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 53050 | 0.67 | 0.785467 |
Target: 5'- gCGUggagUACGACGCGCugaCCgGCGCg-- -3' miRNA: 3'- -GCAa---GUGCUGCGUGua-GGaCGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 88 | 0.67 | 0.785467 |
Target: 5'- uCGgcCGCGcCGCACGcUUCUGCGCa-- -3' miRNA: 3'- -GCaaGUGCuGCGUGU-AGGACGCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 38269 | 0.68 | 0.72294 |
Target: 5'- aCGgacgUCGCGACGCGgAUgCUGCuGUUGUu -3' miRNA: 3'- -GCa---AGUGCUGCGUgUAgGACG-CGAUA- -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 16354 | 0.68 | 0.72294 |
Target: 5'- uCGUUCGCGACcuuguucuGCugGUUCUGgGCg-- -3' miRNA: 3'- -GCAAGUGCUG--------CGugUAGGACgCGaua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 5141 | 0.68 | 0.71104 |
Target: 5'- ----gGCGGCGCugAUCCUgcucggcGCGCUGa -3' miRNA: 3'- gcaagUGCUGCGugUAGGA-------CGCGAUa -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 34502 | 0.69 | 0.668179 |
Target: 5'- cCGUUCACGGCGCGgA---UGCGCUu- -3' miRNA: 3'- -GCAAGUGCUGCGUgUaggACGCGAua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 10818 | 0.69 | 0.668179 |
Target: 5'- aCGaUCACGACcagcgcauGCGCGUCCgccGCGCUc- -3' miRNA: 3'- -GCaAGUGCUG--------CGUGUAGGa--CGCGAua -5' |
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23921 | 5' | -53.2 | NC_005262.1 | + | 18687 | 0.69 | 0.653741 |
Target: 5'- uGUUCGCGGCacccgccgaguugaGCGCggucaacguGUCCUGCGCg-- -3' miRNA: 3'- gCAAGUGCUG--------------CGUG---------UAGGACGCGaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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