Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23922 | 3' | -62 | NC_005262.1 | + | 7199 | 0.66 | 0.437189 |
Target: 5'- cGUCGCCCacGC-GCGGaUGCGCAccugcuUGUUCu -3' miRNA: 3'- -CGGCGGG--CGaCGCC-ACGCGU------ACAGGc -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 1471 | 0.66 | 0.437189 |
Target: 5'- cGCCGCCCGCucgucUGCcg-GCGC-UG-CCGc -3' miRNA: 3'- -CGGCGGGCG-----ACGccaCGCGuACaGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 49167 | 0.66 | 0.428093 |
Target: 5'- gGCCGCaucggCCGCaGCGGcGCGCAcggcgaUGaucUCCGg -3' miRNA: 3'- -CGGCG-----GGCGaCGCCaCGCGU------AC---AGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 49222 | 0.66 | 0.419109 |
Target: 5'- gGCgGCCUcg-GCGGcGCGCA-GUCCGc -3' miRNA: 3'- -CGgCGGGcgaCGCCaCGCGUaCAGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 46255 | 0.66 | 0.410241 |
Target: 5'- uGCCGCCuCGC-GCGcGacCGCGUGcCCGu -3' miRNA: 3'- -CGGCGG-GCGaCGC-CacGCGUACaGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 22345 | 0.66 | 0.409361 |
Target: 5'- cCCGCacuucucuaugauCCGC-GUGGUGCGgaggGUGUCCGg -3' miRNA: 3'- cGGCG-------------GGCGaCGCCACGCg---UACAGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 14056 | 0.66 | 0.401491 |
Target: 5'- cGCCGCCgGCgucggUGCGGcuucgGCcGCcgGUUCGc -3' miRNA: 3'- -CGGCGGgCG-----ACGCCa----CG-CGuaCAGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 4411 | 0.66 | 0.398024 |
Target: 5'- cGCgCGCCUGCUGCGcGaGCGCcUGgagcucggcguugCCGg -3' miRNA: 3'- -CG-GCGGGCGACGC-CaCGCGuACa------------GGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 21787 | 0.67 | 0.367703 |
Target: 5'- gGCCGCCCGauucgagGCGG-GCGUucGUCgCGu -3' miRNA: 3'- -CGGCGGGCga-----CGCCaCGCGuaCAG-GC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 12791 | 0.67 | 0.359566 |
Target: 5'- -aCGCCCGUgagcauuggGCGGcGCGCAg--CCGg -3' miRNA: 3'- cgGCGGGCGa--------CGCCaCGCGUacaGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 28291 | 0.67 | 0.350763 |
Target: 5'- uGUCGCCuaugCGCgcaaGCGcGUGCGCAUGaucgaggcaugguUCCGg -3' miRNA: 3'- -CGGCGG----GCGa---CGC-CACGCGUAC-------------AGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 18805 | 0.68 | 0.33592 |
Target: 5'- cGCCGCCUGCcgcGCGGacUGCuGCAcGUCgGc -3' miRNA: 3'- -CGGCGGGCGa--CGCC--ACG-CGUaCAGgC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 59967 | 0.68 | 0.33592 |
Target: 5'- uUCGCCCGCUcGaucaGGcGCGCAUGcacCCGa -3' miRNA: 3'- cGGCGGGCGA-Cg---CCaCGCGUACa--GGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 52734 | 0.68 | 0.335152 |
Target: 5'- gGCCGCUcgggcucaggcgaCGCUGCGGccuguugcUGCGCGcgGUCUu -3' miRNA: 3'- -CGGCGG-------------GCGACGCC--------ACGCGUa-CAGGc -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 47730 | 0.68 | 0.328294 |
Target: 5'- cGCCGCCUGUaucUGGUGCGCcg--CCGg -3' miRNA: 3'- -CGGCGGGCGac-GCCACGCGuacaGGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 40588 | 0.68 | 0.328294 |
Target: 5'- aCCGUCgCGCUGaCGGUgGCGCAgaugCCGc -3' miRNA: 3'- cGGCGG-GCGAC-GCCA-CGCGUaca-GGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 34205 | 0.68 | 0.328294 |
Target: 5'- uGCCGCCCGCgaucGCGGcuucggGCGacacgcucgaCAUGggcgCCGa -3' miRNA: 3'- -CGGCGGGCGa---CGCCa-----CGC----------GUACa---GGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 23265 | 0.68 | 0.30619 |
Target: 5'- aGCCGCCCGCcGCGacgaugaacuuGUcGCGCAgGUCg- -3' miRNA: 3'- -CGGCGGGCGaCGC-----------CA-CGCGUaCAGgc -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 90 | 0.68 | 0.30619 |
Target: 5'- gGCCGCgCCGCacGCuucUGCGCAUGUcaCCGg -3' miRNA: 3'- -CGGCG-GGCGa-CGcc-ACGCGUACA--GGC- -5' |
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23922 | 3' | -62 | NC_005262.1 | + | 16094 | 0.68 | 0.299079 |
Target: 5'- cGCCGCCCgGC-GCGGUGCuugGCGUcaGaCCGc -3' miRNA: 3'- -CGGCGGG-CGaCGCCACG---CGUA--CaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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