miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23928 5' -54.6 NC_005262.1 + 29007 1.13 0.000779
Target:  5'- gAGGCGAAGCCACACCUUCACCGAUCCg -3'
miRNA:   3'- -UCCGCUUCGGUGUGGAAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 4933 0.8 0.14674
Target:  5'- -cGCGGAGCUGCGCCggcgugacgUCGCCGAUCUg -3'
miRNA:   3'- ucCGCUUCGGUGUGGa--------AGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 41487 0.78 0.213779
Target:  5'- cGGCGcacaaUCACACCgUCACCGAUCCg -3'
miRNA:   3'- uCCGCuuc--GGUGUGGaAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 49736 0.77 0.219459
Target:  5'- cGGcCGAAGCCGCACCgaCGCCGGcggcgCCc -3'
miRNA:   3'- uCC-GCUUCGGUGUGGaaGUGGCUa----GG- -5'
23928 5' -54.6 NC_005262.1 + 59130 0.76 0.269646
Target:  5'- gAGGCGAaccGGCCGgGCCgcgUCGCCGcgCg -3'
miRNA:   3'- -UCCGCU---UCGGUgUGGa--AGUGGCuaGg -5'
23928 5' -54.6 NC_005262.1 + 56917 0.76 0.275143
Target:  5'- cGGCGAgaucaaGGCCGCGCUcgagaagcgcaCGCCGAUCCg -3'
miRNA:   3'- uCCGCU------UCGGUGUGGaa---------GUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 41514 0.76 0.276532
Target:  5'- cGGGCcacacCCACACCgUCACUGAUCCg -3'
miRNA:   3'- -UCCGcuuc-GGUGUGGaAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 11398 0.75 0.30548
Target:  5'- cGGCuccacgccGAAGCCGCGCCg-CGCCGggCCg -3'
miRNA:   3'- uCCG--------CUUCGGUGUGGaaGUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 24364 0.74 0.339943
Target:  5'- uGGCGAgguaauccgagagcaGGCCGC-CCcaUACCGAUCCg -3'
miRNA:   3'- uCCGCU---------------UCGGUGuGGaaGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 41947 0.74 0.344855
Target:  5'- cGGGCGAAaucCCGCGCCUUgUGCCGcgCCu -3'
miRNA:   3'- -UCCGCUUc--GGUGUGGAA-GUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 27958 0.74 0.361595
Target:  5'- uGGGCGGucGCgGCGCCgaCGCCGcUCCg -3'
miRNA:   3'- -UCCGCUu-CGgUGUGGaaGUGGCuAGG- -5'
23928 5' -54.6 NC_005262.1 + 53322 0.73 0.405857
Target:  5'- aAGGCGAGcgaccgcgcgcGCCGCuACC-UCGCCGA-CCg -3'
miRNA:   3'- -UCCGCUU-----------CGGUG-UGGaAGUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 40952 0.73 0.414179
Target:  5'- uGGCGAgauAGCCgacgaGCGCCUUCGCCGcgaaguaGUCg -3'
miRNA:   3'- uCCGCU---UCGG-----UGUGGAAGUGGC-------UAGg -5'
23928 5' -54.6 NC_005262.1 + 28427 0.73 0.41511
Target:  5'- gAGGuCGAaucgGGCCGCGCCgugcUCGCCGugucgCCg -3'
miRNA:   3'- -UCC-GCU----UCGGUGUGGa---AGUGGCua---GG- -5'
23928 5' -54.6 NC_005262.1 + 25302 0.72 0.443627
Target:  5'- cGGa-GAGCCACACCUUCACgacuugcccguUGAUCUc -3'
miRNA:   3'- uCCgcUUCGGUGUGGAAGUG-----------GCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 6717 0.72 0.463238
Target:  5'- cGG-GAAGCCGCcgAUC-UCGCCGAUCUg -3'
miRNA:   3'- uCCgCUUCGGUG--UGGaAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 998 0.71 0.514132
Target:  5'- gGGGCGggGCgGuguagaGCUUgUCGCCGAUCUu -3'
miRNA:   3'- -UCCGCuuCGgUg-----UGGA-AGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 35004 0.71 0.514132
Target:  5'- gGGcGCGAGGUCACggucgacguccAUCUUCACUGcgCCg -3'
miRNA:   3'- -UC-CGCUUCGGUG-----------UGGAAGUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 24754 0.7 0.53513
Target:  5'- uGGGCGuGGUgGCGCCgUUACCGAUg- -3'
miRNA:   3'- -UCCGCuUCGgUGUGGaAGUGGCUAgg -5'
23928 5' -54.6 NC_005262.1 + 29482 0.7 0.545743
Target:  5'- aAGGCGAAGCaCAUcaGCCg-CAUggCGAUCCg -3'
miRNA:   3'- -UCCGCUUCG-GUG--UGGaaGUG--GCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.