miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23928 5' -54.6 NC_005262.1 + 62 0.67 0.718935
Target:  5'- cGGgGAGGCCGCGgCUcgcgaagaagUCGgCCGcgCCg -3'
miRNA:   3'- uCCgCUUCGGUGUgGA----------AGU-GGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 218 0.66 0.770619
Target:  5'- cGGCGGAGCCagACACgCUacCGCCGGc-- -3'
miRNA:   3'- uCCGCUUCGG--UGUG-GAa-GUGGCUagg -5'
23928 5' -54.6 NC_005262.1 + 998 0.71 0.514132
Target:  5'- gGGGCGggGCgGuguagaGCUUgUCGCCGAUCUu -3'
miRNA:   3'- -UCCGCuuCGgUg-----UGGA-AGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 2713 0.66 0.799074
Target:  5'- cAGGUuaucGGGCUGCGCCUUCGUCGAcggcguaUCCg -3'
miRNA:   3'- -UCCGc---UUCGGUGUGGAAGUGGCU-------AGG- -5'
23928 5' -54.6 NC_005262.1 + 2773 0.7 0.545743
Target:  5'- cGGCGGGuGCCGCAuCCUugUCGUCGAUCa -3'
miRNA:   3'- uCCGCUU-CGGUGU-GGA--AGUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 3420 0.68 0.686818
Target:  5'- cGGCG-AGCCGCAUcgCUUCAgCGcgCUc -3'
miRNA:   3'- uCCGCuUCGGUGUG--GAAGUgGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 3846 0.68 0.686818
Target:  5'- cGGGCGAAucuGCUucgcgaGCGCCUcgUCGuuGAUCUg -3'
miRNA:   3'- -UCCGCUU---CGG------UGUGGA--AGUggCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 4933 0.8 0.14674
Target:  5'- -cGCGGAGCUGCGCCggcgugacgUCGCCGAUCUg -3'
miRNA:   3'- ucCGCUUCGGUGUGGa--------AGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 5906 0.66 0.790386
Target:  5'- cGGGCGGGa--GCGCCUUC-UCGAUCUc -3'
miRNA:   3'- -UCCGCUUcggUGUGGAAGuGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 6717 0.72 0.463238
Target:  5'- cGG-GAAGCCGCcgAUC-UCGCCGAUCUg -3'
miRNA:   3'- uCCgCUUCGGUG--UGGaAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 6989 0.69 0.632394
Target:  5'- cAGGCGcuccAGCCGCucgacgucgGCCUUCagGCCGG-CCa -3'
miRNA:   3'- -UCCGCu---UCGGUG---------UGGAAG--UGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 7363 0.66 0.790386
Target:  5'- uAGGCGucGCCACgACggUCggGCCG-UCCu -3'
miRNA:   3'- -UCCGCuuCGGUG-UGgaAG--UGGCuAGG- -5'
23928 5' -54.6 NC_005262.1 + 7501 0.69 0.621469
Target:  5'- uGuCGAAGCCGCGguUCUUCGCCGAcugcucgCCg -3'
miRNA:   3'- uCcGCUUCGGUGU--GGAAGUGGCUa------GG- -5'
23928 5' -54.6 NC_005262.1 + 9431 0.68 0.69759
Target:  5'- cGGaCGucuGCCAgcCCUUCGCCgGGUCCu -3'
miRNA:   3'- uCC-GCuu-CGGUguGGAAGUGG-CUAGG- -5'
23928 5' -54.6 NC_005262.1 + 9440 0.66 0.78746
Target:  5'- gGGuGCGAAGCCcgcauugugcgGCACCaUCcugcacgguaugguGCCGAUuCCg -3'
miRNA:   3'- -UC-CGCUUCGG-----------UGUGGaAG--------------UGGCUA-GG- -5'
23928 5' -54.6 NC_005262.1 + 11398 0.75 0.30548
Target:  5'- cGGCuccacgccGAAGCCGCGCCg-CGCCGggCCg -3'
miRNA:   3'- uCCG--------CUUCGGUGUGGaaGUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 12003 0.69 0.610553
Target:  5'- gAGGCGGuacgugacAGCCugGaCCUgcgCAUCGGUCa -3'
miRNA:   3'- -UCCGCU--------UCGGugU-GGAa--GUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 12720 0.69 0.610553
Target:  5'- uGGCGucccGCCggaGCACCgcgUCAUCGGUCa -3'
miRNA:   3'- uCCGCuu--CGG---UGUGGa--AGUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 13843 0.66 0.809503
Target:  5'- cGGCGAucggcucgaacGUCACGCCaUCcggGCCGGUCg -3'
miRNA:   3'- uCCGCUu----------CGGUGUGGaAG---UGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 16872 0.68 0.650962
Target:  5'- cAGGCGcccggccgcgcgccGGGCCGCACCacaccgCACCGcaCCg -3'
miRNA:   3'- -UCCGC--------------UUCGGUGUGGaa----GUGGCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.