miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23928 5' -54.6 NC_005262.1 + 61467 0.69 0.599655
Target:  5'- cGGCGAAGCgCuagacgACAUCUUCGCgCGG-CCg -3'
miRNA:   3'- uCCGCUUCG-G------UGUGGAAGUG-GCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 36132 0.7 0.545743
Target:  5'- cGGCGAGGCgaGCACCgccaGCgCGAUCg -3'
miRNA:   3'- uCCGCUUCGg-UGUGGaag-UG-GCUAGg -5'
23928 5' -54.6 NC_005262.1 + 40256 0.7 0.545743
Target:  5'- -cGCGcAGCaaugACACCUUCACC-AUCCa -3'
miRNA:   3'- ucCGCuUCGg---UGUGGAAGUGGcUAGG- -5'
23928 5' -54.6 NC_005262.1 + 24204 0.7 0.56716
Target:  5'- gAGGCGGcAGCCgcgacgcuGCGCCggcaCGCCGAUUg -3'
miRNA:   3'- -UCCGCU-UCGG--------UGUGGaa--GUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 17913 0.7 0.577951
Target:  5'- cGGCG-AGCCGCcgAUCggCGCCGAcgCCa -3'
miRNA:   3'- uCCGCuUCGGUG--UGGaaGUGGCUa-GG- -5'
23928 5' -54.6 NC_005262.1 + 18876 0.7 0.577951
Target:  5'- --cCGGAGCaGCGCCUUgCGCCGcAUCCa -3'
miRNA:   3'- uccGCUUCGgUGUGGAA-GUGGC-UAGG- -5'
23928 5' -54.6 NC_005262.1 + 46436 0.69 0.599655
Target:  5'- gGGGCcc-GCCGCGCCgcccgCGCCGGaCCc -3'
miRNA:   3'- -UCCGcuuCGGUGUGGaa---GUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 54428 0.69 0.599655
Target:  5'- gAGGCGcAGGCCGcCGCgcgCGCCGA-CCg -3'
miRNA:   3'- -UCCGC-UUCGGU-GUGgaaGUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 53989 0.69 0.599655
Target:  5'- cGGCGAuGCCuacgACGCCUUCACggCGAagCa -3'
miRNA:   3'- uCCGCUuCGG----UGUGGAAGUG--GCUagG- -5'
23928 5' -54.6 NC_005262.1 + 29482 0.7 0.545743
Target:  5'- aAGGCGAAGCaCAUcaGCCg-CAUggCGAUCCg -3'
miRNA:   3'- -UCCGCUUCG-GUG--UGGaaGUG--GCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 2773 0.7 0.545743
Target:  5'- cGGCGGGuGCCGCAuCCUugUCGUCGAUCa -3'
miRNA:   3'- uCCGCUU-CGGUGU-GGA--AGUGGCUAGg -5'
23928 5' -54.6 NC_005262.1 + 998 0.71 0.514132
Target:  5'- gGGGCGggGCgGuguagaGCUUgUCGCCGAUCUu -3'
miRNA:   3'- -UCCGCuuCGgUg-----UGGA-AGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 49736 0.77 0.219459
Target:  5'- cGGcCGAAGCCGCACCgaCGCCGGcggcgCCc -3'
miRNA:   3'- uCC-GCUUCGGUGUGGaaGUGGCUa----GG- -5'
23928 5' -54.6 NC_005262.1 + 59130 0.76 0.269646
Target:  5'- gAGGCGAaccGGCCGgGCCgcgUCGCCGcgCg -3'
miRNA:   3'- -UCCGCU---UCGGUgUGGa--AGUGGCuaGg -5'
23928 5' -54.6 NC_005262.1 + 56917 0.76 0.275143
Target:  5'- cGGCGAgaucaaGGCCGCGCUcgagaagcgcaCGCCGAUCCg -3'
miRNA:   3'- uCCGCU------UCGGUGUGGaa---------GUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 41514 0.76 0.276532
Target:  5'- cGGGCcacacCCACACCgUCACUGAUCCg -3'
miRNA:   3'- -UCCGcuuc-GGUGUGGaAGUGGCUAGG- -5'
23928 5' -54.6 NC_005262.1 + 11398 0.75 0.30548
Target:  5'- cGGCuccacgccGAAGCCGCGCCg-CGCCGggCCg -3'
miRNA:   3'- uCCG--------CUUCGGUGUGGaaGUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 41947 0.74 0.344855
Target:  5'- cGGGCGAAaucCCGCGCCUUgUGCCGcgCCu -3'
miRNA:   3'- -UCCGCUUc--GGUGUGGAA-GUGGCuaGG- -5'
23928 5' -54.6 NC_005262.1 + 53322 0.73 0.405857
Target:  5'- aAGGCGAGcgaccgcgcgcGCCGCuACC-UCGCCGA-CCg -3'
miRNA:   3'- -UCCGCUU-----------CGGUG-UGGaAGUGGCUaGG- -5'
23928 5' -54.6 NC_005262.1 + 28427 0.73 0.41511
Target:  5'- gAGGuCGAaucgGGCCGCGCCgugcUCGCCGugucgCCg -3'
miRNA:   3'- -UCC-GCU----UCGGUGUGGa---AGUGGCua---GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.