miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 3' -53 NC_005262.1 + 23629 1.14 0.001045
Target:  5'- aGCGGAAAGUGCAGGAAACGCCGCACCc -3'
miRNA:   3'- -CGCCUUUCACGUCCUUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 1915 0.82 0.15653
Target:  5'- gGCGGAGGGUGCGGGuuGCGUgGCucGCUg -3'
miRNA:   3'- -CGCCUUUCACGUCCuuUGCGgCG--UGG- -5'
23935 3' -53 NC_005262.1 + 11430 0.81 0.179417
Target:  5'- cGCcGAAGGUGCGcGAcACGCCGCGCCc -3'
miRNA:   3'- -CGcCUUUCACGUcCUuUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 54324 0.77 0.284685
Target:  5'- uGCGGAAucggcaccauaccGUGCAGGAuggUGCCGCACa -3'
miRNA:   3'- -CGCCUUu------------CACGUCCUuu-GCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 51843 0.77 0.287569
Target:  5'- uGCGcGAAGUGCu-GAAGCGCgGCGCCg -3'
miRNA:   3'- -CGCcUUUCACGucCUUUGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 17252 0.76 0.325554
Target:  5'- cGCGGGAGcgGCGGccGGCGCCGCGCUg -3'
miRNA:   3'- -CGCCUUUcaCGUCcuUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 1738 0.76 0.333585
Target:  5'- cGCcGu--GUGCAGGAGgcgauGCGCCGCAUCg -3'
miRNA:   3'- -CGcCuuuCACGUCCUU-----UGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 14140 0.76 0.34176
Target:  5'- aGUGGGAuggcGUGCgccGGGAuugucCGCCGCGCCg -3'
miRNA:   3'- -CGCCUUu---CACG---UCCUuu---GCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 14003 0.75 0.367143
Target:  5'- cCGGAcGGUGCAGGGgcguccGGCGCgGCAgCg -3'
miRNA:   3'- cGCCUuUCACGUCCU------UUGCGgCGUgG- -5'
23935 3' -53 NC_005262.1 + 58582 0.75 0.383877
Target:  5'- gGC-GAucGUGCAGGAuACGCCcucggucGCGCCg -3'
miRNA:   3'- -CGcCUuuCACGUCCUuUGCGG-------CGUGG- -5'
23935 3' -53 NC_005262.1 + 48148 0.74 0.418826
Target:  5'- cGCGGAAGGcGaGGGGGAUgcccgacgcguucaGCCGCGCCu -3'
miRNA:   3'- -CGCCUUUCaCgUCCUUUG--------------CGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 54424 0.74 0.440896
Target:  5'- cGCGG-AGGcGCAGGc--CGCCGCGCg -3'
miRNA:   3'- -CGCCuUUCaCGUCCuuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 35432 0.74 0.450695
Target:  5'- cGCGGAagucgGAGuUGCGGcccuuGAGGCGCUGCACg -3'
miRNA:   3'- -CGCCU-----UUC-ACGUC-----CUUUGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 38233 0.73 0.470645
Target:  5'- uCGGAGAuGUGCAGGcgGuggaucgugcCGCCGCGCa -3'
miRNA:   3'- cGCCUUU-CACGUCCuuU----------GCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 1181 0.73 0.480787
Target:  5'- cGCGGAAgcccAGUGCGaGuu-CGCCGCGCg -3'
miRNA:   3'- -CGCCUU----UCACGUcCuuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 52067 0.73 0.480787
Target:  5'- cCGG--GGUGCGGGAuuuUGCCGCAUa -3'
miRNA:   3'- cGCCuuUCACGUCCUuu-GCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 29471 0.73 0.491034
Target:  5'- cGCcuGAuAGUGCAGGGcGGCGaCCGUGCCg -3'
miRNA:   3'- -CGc-CUuUCACGUCCU-UUGC-GGCGUGG- -5'
23935 3' -53 NC_005262.1 + 51125 0.73 0.501381
Target:  5'- gGCaGAAcgGGcGCAGGGuuCGCCGCGCg -3'
miRNA:   3'- -CGcCUU--UCaCGUCCUuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 46422 0.73 0.511823
Target:  5'- cCGcAAGGUccGCAGGGGccCGCCGCGCCg -3'
miRNA:   3'- cGCcUUUCA--CGUCCUUu-GCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 23576 0.73 0.511823
Target:  5'- cGCGGGc---GCAGGAGAuCGCCGUgaaaACCg -3'
miRNA:   3'- -CGCCUuucaCGUCCUUU-GCGGCG----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.