miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 3' -53 NC_005262.1 + 61 0.66 0.845927
Target:  5'- cCGGGGAGgccGCGGcucgcGAAGaagucgGCCGCGCCg -3'
miRNA:   3'- cGCCUUUCa--CGUC-----CUUUg-----CGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 1181 0.73 0.480787
Target:  5'- cGCGGAAgcccAGUGCGaGuu-CGCCGCGCg -3'
miRNA:   3'- -CGCCUU----UCACGUcCuuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 1507 0.72 0.541514
Target:  5'- uGCGGAGGGaggcUGCGGcGGAACGUauugcgugaacaGCGCCa -3'
miRNA:   3'- -CGCCUUUC----ACGUC-CUUUGCGg-----------CGUGG- -5'
23935 3' -53 NC_005262.1 + 1738 0.76 0.333585
Target:  5'- cGCcGu--GUGCAGGAGgcgauGCGCCGCAUCg -3'
miRNA:   3'- -CGcCuuuCACGUCCUU-----UGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 1915 0.82 0.15653
Target:  5'- gGCGGAGGGUGCGGGuuGCGUgGCucGCUg -3'
miRNA:   3'- -CGCCUUUCACGUCCuuUGCGgCG--UGG- -5'
23935 3' -53 NC_005262.1 + 3735 0.68 0.790413
Target:  5'- cGCGGcguuGcGCAGGAugAACGCCGgguuauaGCCg -3'
miRNA:   3'- -CGCCuuu-CaCGUCCU--UUGCGGCg------UGG- -5'
23935 3' -53 NC_005262.1 + 3827 0.67 0.837183
Target:  5'- -aGGAAGGUGCc--GAGCGCCccGCGCg -3'
miRNA:   3'- cgCCUUUCACGuccUUUGCGG--CGUGg -5'
23935 3' -53 NC_005262.1 + 4807 0.68 0.790413
Target:  5'- aGCGcGAcGGcGCGGGAGGCgugagGCCGCcggcgGCCg -3'
miRNA:   3'- -CGC-CUuUCaCGUCCUUUG-----CGGCG-----UGG- -5'
23935 3' -53 NC_005262.1 + 5290 0.69 0.728971
Target:  5'- gGCGGucgacuGGUuCAGGuu-CGCCGCuACCa -3'
miRNA:   3'- -CGCCuu----UCAcGUCCuuuGCGGCG-UGG- -5'
23935 3' -53 NC_005262.1 + 5317 0.66 0.854446
Target:  5'- uCGGAGcuGGccgGCAGG-AGCuUCGCACCg -3'
miRNA:   3'- cGCCUU--UCa--CGUCCuUUGcGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 6039 0.68 0.770473
Target:  5'- gGUGGuguGGUGCGGcacGAUaCCGCACCa -3'
miRNA:   3'- -CGCCuu-UCACGUCcu-UUGcGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 6366 0.72 0.532968
Target:  5'- cGCGGAcGGUGCcGGA-GCGuuGUcgGCCg -3'
miRNA:   3'- -CGCCUuUCACGuCCUuUGCggCG--UGG- -5'
23935 3' -53 NC_005262.1 + 9096 0.66 0.870777
Target:  5'- gGCcGAAAG-GCucGGGAACGCUGaACCg -3'
miRNA:   3'- -CGcCUUUCaCGu-CCUUUGCGGCgUGG- -5'
23935 3' -53 NC_005262.1 + 10421 0.66 0.870777
Target:  5'- cGCGGuc--UGCGGcAGGCGCaugGCGCCg -3'
miRNA:   3'- -CGCCuuucACGUCcUUUGCGg--CGUGG- -5'
23935 3' -53 NC_005262.1 + 11430 0.81 0.179417
Target:  5'- cGCcGAAGGUGCGcGAcACGCCGCGCCc -3'
miRNA:   3'- -CGcCUUUCACGUcCUuUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 12381 0.67 0.819055
Target:  5'- uCGaGGAGGUcguacGCAccGAAACGCUGCGCCu -3'
miRNA:   3'- cGC-CUUUCA-----CGUc-CUUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 12838 0.7 0.631009
Target:  5'- cGCGGccuc-GCGGGAAcCGUCGUGCCg -3'
miRNA:   3'- -CGCCuuucaCGUCCUUuGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 13531 0.69 0.707591
Target:  5'- aCGGAAGcguGUGCAGcGGcaucGAgGCCGCgACCg -3'
miRNA:   3'- cGCCUUU---CACGUC-CU----UUgCGGCG-UGG- -5'
23935 3' -53 NC_005262.1 + 13805 0.71 0.606781
Target:  5'- cGCGGcuucaucgGCGGGAGcggGCGCCGCugUc -3'
miRNA:   3'- -CGCCuuuca---CGUCCUU---UGCGGCGugG- -5'
23935 3' -53 NC_005262.1 + 14003 0.75 0.367143
Target:  5'- cCGGAcGGUGCAGGGgcguccGGCGCgGCAgCg -3'
miRNA:   3'- cGCCUuUCACGUCCU------UUGCGgCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.