miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 3' -53 NC_005262.1 + 51943 0.69 0.707591
Target:  5'- aCGGAcaAGGUGgAGGccgcuCGCgCGCGCCu -3'
miRNA:   3'- cGCCU--UUCACgUCCuuu--GCG-GCGUGG- -5'
23935 3' -53 NC_005262.1 + 20483 0.72 0.543658
Target:  5'- aGCGGcGAGUGCGuaau-CGCgCGCACCa -3'
miRNA:   3'- -CGCCuUUCACGUccuuuGCG-GCGUGG- -5'
23935 3' -53 NC_005262.1 + 29777 0.72 0.543658
Target:  5'- cCGGcguAGUGCcGGAcGGCGCgGCACCc -3'
miRNA:   3'- cGCCuu-UCACGuCCU-UUGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 53496 0.71 0.608981
Target:  5'- aCGGccGAAGUGCAG---ACGCCGCagggGCCg -3'
miRNA:   3'- cGCC--UUUCACGUCcuuUGCGGCG----UGG- -5'
23935 3' -53 NC_005262.1 + 12838 0.7 0.631009
Target:  5'- cGCGGccuc-GCGGGAAcCGUCGUGCCg -3'
miRNA:   3'- -CGCCuuucaCGUCCUUuGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 18122 0.7 0.642029
Target:  5'- uUGGGAGG-GUAucgacGAAGCGCUGCGCCu -3'
miRNA:   3'- cGCCUUUCaCGUc----CUUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 57287 0.7 0.674993
Target:  5'- aCGGcccgcGUGCAGcagaacGAGCGCCGCAUCg -3'
miRNA:   3'- cGCCuuu--CACGUCc-----UUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 22951 0.69 0.696784
Target:  5'- cGCGGGGAG-GCGu--GAUGCUGCACUu -3'
miRNA:   3'- -CGCCUUUCaCGUccuUUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 13531 0.69 0.707591
Target:  5'- aCGGAAGcguGUGCAGcGGcaucGAgGCCGCgACCg -3'
miRNA:   3'- cGCCUUU---CACGUC-CU----UUgCGGCG-UGG- -5'
23935 3' -53 NC_005262.1 + 15574 0.72 0.543658
Target:  5'- aGCaGGAGGaGCuGGAGGCGCgCGCGCg -3'
miRNA:   3'- -CGcCUUUCaCGuCCUUUGCG-GCGUGg -5'
23935 3' -53 NC_005262.1 + 24151 0.72 0.543658
Target:  5'- -aGGAuGGgcgGCAGGAGGCGCa-CGCCu -3'
miRNA:   3'- cgCCUuUCa--CGUCCUUUGCGgcGUGG- -5'
23935 3' -53 NC_005262.1 + 1507 0.72 0.541514
Target:  5'- uGCGGAGGGaggcUGCGGcGGAACGUauugcgugaacaGCGCCa -3'
miRNA:   3'- -CGCCUUUC----ACGUC-CUUUGCGg-----------CGUGG- -5'
23935 3' -53 NC_005262.1 + 11430 0.81 0.179417
Target:  5'- cGCcGAAGGUGCGcGAcACGCCGCGCCc -3'
miRNA:   3'- -CGcCUUUCACGUcCUuUGCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 51843 0.77 0.287569
Target:  5'- uGCGcGAAGUGCu-GAAGCGCgGCGCCg -3'
miRNA:   3'- -CGCcUUUCACGucCUUUGCGgCGUGG- -5'
23935 3' -53 NC_005262.1 + 14140 0.76 0.34176
Target:  5'- aGUGGGAuggcGUGCgccGGGAuugucCGCCGCGCCg -3'
miRNA:   3'- -CGCCUUu---CACG---UCCUuu---GCGGCGUGG- -5'
23935 3' -53 NC_005262.1 + 54424 0.74 0.440896
Target:  5'- cGCGG-AGGcGCAGGc--CGCCGCGCg -3'
miRNA:   3'- -CGCCuUUCaCGUCCuuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 52067 0.73 0.480787
Target:  5'- cCGG--GGUGCGGGAuuuUGCCGCAUa -3'
miRNA:   3'- cGCCuuUCACGUCCUuu-GCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 1181 0.73 0.480787
Target:  5'- cGCGGAAgcccAGUGCGaGuu-CGCCGCGCg -3'
miRNA:   3'- -CGCCUU----UCACGUcCuuuGCGGCGUGg -5'
23935 3' -53 NC_005262.1 + 23576 0.73 0.511823
Target:  5'- cGCGGGc---GCAGGAGAuCGCCGUgaaaACCg -3'
miRNA:   3'- -CGCCUuucaCGUCCUUU-GCGGCG----UGG- -5'
23935 3' -53 NC_005262.1 + 46422 0.73 0.511823
Target:  5'- cCGcAAGGUccGCAGGGGccCGCCGCGCCg -3'
miRNA:   3'- cGCcUUUCA--CGUCCUUu-GCGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.