miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23935 5' -54.4 NC_005262.1 + 12807 0.66 0.829835
Target:  5'- gGCGGCGCGcagccGGCG-CGUGaagaaggagcgcggcCUcgCGGGAa -3'
miRNA:   3'- -CGUCGCGC-----UCGCaGCAU---------------GAaaGCCCU- -5'
23935 5' -54.4 NC_005262.1 + 46318 0.66 0.826251
Target:  5'- cGCGGCGCGcGCuUCGUcCUggaacUCGGcGAa -3'
miRNA:   3'- -CGUCGCGCuCGcAGCAuGAa----AGCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 18104 0.66 0.826251
Target:  5'- aGCGGC-CG-GCGUCG-ACaaUUGGGAg -3'
miRNA:   3'- -CGUCGcGCuCGCAGCaUGaaAGCCCU- -5'
23935 5' -54.4 NC_005262.1 + 17330 0.66 0.817153
Target:  5'- aGgAGCGCGAGCG-CGU-Cg--CGGcGAu -3'
miRNA:   3'- -CgUCGCGCUCGCaGCAuGaaaGCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 58561 0.66 0.807865
Target:  5'- uCAGCGCG-GCGUCG-ACgccaCGGcGAu -3'
miRNA:   3'- cGUCGCGCuCGCAGCaUGaaa-GCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 50422 0.66 0.795522
Target:  5'- cGgAGCGCGAGggccgcgugcacguCGUCGUGCcgcgCGaGGAg -3'
miRNA:   3'- -CgUCGCGCUC--------------GCAGCAUGaaa-GC-CCU- -5'
23935 5' -54.4 NC_005262.1 + 52457 0.66 0.788757
Target:  5'- cGC-GCGCGAGCGgCGU-CUUgCGGaGGa -3'
miRNA:   3'- -CGuCGCGCUCGCaGCAuGAAaGCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 34508 0.66 0.788757
Target:  5'- aCGGCGCGGauGCGcuucacgagcUCGUcGCggUUCGGGAu -3'
miRNA:   3'- cGUCGCGCU--CGC----------AGCA-UGa-AAGCCCU- -5'
23935 5' -54.4 NC_005262.1 + 35578 0.66 0.788757
Target:  5'- -gAGCGCGAaUGUUGUGCUcggcgCGGGc -3'
miRNA:   3'- cgUCGCGCUcGCAGCAUGAaa---GCCCu -5'
23935 5' -54.4 NC_005262.1 + 33970 0.67 0.778959
Target:  5'- cGCGGCGuCGAGCugcuggacGUCGUGCguaacaUGGGc -3'
miRNA:   3'- -CGUCGC-GCUCG--------CAGCAUGaaa---GCCCu -5'
23935 5' -54.4 NC_005262.1 + 11084 0.67 0.769011
Target:  5'- aGCAGCGCGgccucguccGGCGUCGgcCgg-CGGc- -3'
miRNA:   3'- -CGUCGCGC---------UCGCAGCauGaaaGCCcu -5'
23935 5' -54.4 NC_005262.1 + 25073 0.67 0.748714
Target:  5'- cCAGCGCuGAGCGUCGgguauuUGCUgccuucgcCGGGc -3'
miRNA:   3'- cGUCGCG-CUCGCAGC------AUGAaa------GCCCu -5'
23935 5' -54.4 NC_005262.1 + 31014 0.67 0.738386
Target:  5'- cCGGCGCGccgccGGUGUCGaGCUUgUCGGcGAu -3'
miRNA:   3'- cGUCGCGC-----UCGCAGCaUGAA-AGCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 27008 0.68 0.727953
Target:  5'- aGCAGCaucaGUGAGCGUaacUGCggUCGGGc -3'
miRNA:   3'- -CGUCG----CGCUCGCAgc-AUGaaAGCCCu -5'
23935 5' -54.4 NC_005262.1 + 35006 0.68 0.717426
Target:  5'- aGCAGCGCGGGCccGUCcGUACcaa-GGcGAa -3'
miRNA:   3'- -CGUCGCGCUCG--CAG-CAUGaaagCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 38546 0.68 0.717426
Target:  5'- gGCGGCGCaggagccGGCGUUGcGCgcggUUCGGGc -3'
miRNA:   3'- -CGUCGCGc------UCGCAGCaUGa---AAGCCCu -5'
23935 5' -54.4 NC_005262.1 + 15832 0.68 0.717426
Target:  5'- -aGGCGCGAGagGUCGUucgcGCcUUCGGuGAa -3'
miRNA:   3'- cgUCGCGCUCg-CAGCA----UGaAAGCC-CU- -5'
23935 5' -54.4 NC_005262.1 + 18647 0.68 0.706817
Target:  5'- cGCAGCGCGAGCGccuugUCGcGCacgUUCuGGc -3'
miRNA:   3'- -CGUCGCGCUCGC-----AGCaUGa--AAGcCCu -5'
23935 5' -54.4 NC_005262.1 + 13710 0.68 0.69292
Target:  5'- cGCGGCGCGgguucggucggcgcAGCGgccuUCGUcuccgGCUUcgucUCGGGAg -3'
miRNA:   3'- -CGUCGCGC--------------UCGC----AGCA-----UGAA----AGCCCU- -5'
23935 5' -54.4 NC_005262.1 + 39590 0.69 0.652915
Target:  5'- cCGGCGC-AGCGUCGcgGCUgccgccUCGGGc -3'
miRNA:   3'- cGUCGCGcUCGCAGCa-UGAa-----AGCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.