miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 3' -53.9 NC_005262.1 + 23047 1.13 0.001072
Target:  5'- gCCGUUGAUUUGGAACGCGCCGCCGCCc -3'
miRNA:   3'- -GGCAACUAAACCUUGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 17021 0.82 0.140616
Target:  5'- gCCGUUGAUacc--GCGCGUCGCCGCCu -3'
miRNA:   3'- -GGCAACUAaaccuUGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 58715 0.81 0.169942
Target:  5'- aCCGccGAgccGGucgcACGCGCCGCCGCCg -3'
miRNA:   3'- -GGCaaCUaaaCCu---UGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 33824 0.77 0.271373
Target:  5'- uCCGUggugccaGAUUUGGcACcuuCGCCGCCGCCc -3'
miRNA:   3'- -GGCAa------CUAAACCuUGc--GCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 15389 0.77 0.27824
Target:  5'- gCCGggGGUUUGacugauGCGCGCUGCUGCUg -3'
miRNA:   3'- -GGCaaCUAAACcu----UGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 28543 0.77 0.285245
Target:  5'- gCCGUUcgccgGGGGCGCccaGCCGCUGCCg -3'
miRNA:   3'- -GGCAAcuaaaCCUUGCG---CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 63235 0.77 0.292388
Target:  5'- uCCGUUGAacccgUGGGcaauccucgGCGCcaucguggcaGCCGCCGCCu -3'
miRNA:   3'- -GGCAACUaa---ACCU---------UGCG----------CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 63309 0.76 0.314653
Target:  5'- gCGUcGAcgUGGAacacGCGCGCCGCguCGCCg -3'
miRNA:   3'- gGCAaCUaaACCU----UGCGCGGCG--GCGG- -5'
23937 3' -53.9 NC_005262.1 + 54828 0.76 0.330196
Target:  5'- gCCGaugGAUUUGGAccgacacgcaGCGCGCCGaCCGgCu -3'
miRNA:   3'- -GGCaa-CUAAACCU----------UGCGCGGC-GGCgG- -5'
23937 3' -53.9 NC_005262.1 + 25327 0.74 0.397897
Target:  5'- cCCGUUGAUcucguaGGAuacggcgacgaGCGUGCCGUCGUCc -3'
miRNA:   3'- -GGCAACUAaa----CCU-----------UGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14420 0.74 0.397897
Target:  5'- cCCGcggUGAU---GAACGCGCgCGUCGCCg -3'
miRNA:   3'- -GGCa--ACUAaacCUUGCGCG-GCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14545 0.74 0.425481
Target:  5'- cUCGUUGAUcUGGucgcggaccucGCGCGCggacugcgCGCCGCCg -3'
miRNA:   3'- -GGCAACUAaACCu----------UGCGCG--------GCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14104 0.74 0.425481
Target:  5'- gCCGUcgcGGUUcaGGuugcGCGCGCCGCCGaCCa -3'
miRNA:   3'- -GGCAa--CUAAa-CCu---UGCGCGGCGGC-GG- -5'
23937 3' -53.9 NC_005262.1 + 42587 0.74 0.434926
Target:  5'- --------aUGGAACGCGCCGCCGg- -3'
miRNA:   3'- ggcaacuaaACCUUGCGCGGCGGCgg -5'
23937 3' -53.9 NC_005262.1 + 38232 0.73 0.444491
Target:  5'- cUCGgaGAUgugcaggcggUGGAuCGUGCCGCCGCg -3'
miRNA:   3'- -GGCaaCUAa---------ACCUuGCGCGGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 36624 0.73 0.473873
Target:  5'- gCgGUUcGGUUgcUGGAugGCGCCauguCCGCCg -3'
miRNA:   3'- -GgCAA-CUAA--ACCUugCGCGGc---GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12693 0.72 0.505224
Target:  5'- gCCGuUUGAgagcggauauuucgUGGAugGCGUC-CCGCCg -3'
miRNA:   3'- -GGC-AACUaa------------ACCUugCGCGGcGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 30603 0.72 0.524873
Target:  5'- gCCGcUGAag-GGcGCGaagaucgaGCCGCCGCCg -3'
miRNA:   3'- -GGCaACUaaaCCuUGCg-------CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 52201 0.72 0.524873
Target:  5'- aUCGUg----UGGAagucgcucgaGCGCugGCCGCCGCCg -3'
miRNA:   3'- -GGCAacuaaACCU----------UGCG--CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 57210 0.72 0.535332
Target:  5'- gUCGcUGAUcUGGAAuggagccugauCGCGCCGCuCGUCg -3'
miRNA:   3'- -GGCaACUAaACCUU-----------GCGCGGCG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.