miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 3' -53.9 NC_005262.1 + 33851 0.67 0.807778
Target:  5'- cCCGagcUGAUcgagUGGAucaACGaCGCCGCgCGCg -3'
miRNA:   3'- -GGCa--ACUAa---ACCU---UGC-GCGGCG-GCGg -5'
23937 3' -53.9 NC_005262.1 + 48105 0.68 0.76909
Target:  5'- gCGaUGA--UGuGACGCGCCGCgCGCa -3'
miRNA:   3'- gGCaACUaaACcUUGCGCGGCG-GCGg -5'
23937 3' -53.9 NC_005262.1 + 61748 0.67 0.776038
Target:  5'- gUCGUgGAUgcUGGGguagagcucguagcACGCGCCGaCCGaCCa -3'
miRNA:   3'- -GGCAaCUAa-ACCU--------------UGCGCGGC-GGC-GG- -5'
23937 3' -53.9 NC_005262.1 + 49336 0.67 0.778994
Target:  5'- aCCGacGAgcaGGcGCGCGCCGCgcuCGCUg -3'
miRNA:   3'- -GGCaaCUaaaCCuUGCGCGGCG---GCGG- -5'
23937 3' -53.9 NC_005262.1 + 6371 0.67 0.794529
Target:  5'- gCGcgGAUUgucagucaggucGAGCGUGCUGCCGUCg -3'
miRNA:   3'- gGCaaCUAAac----------CUUGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6539 0.67 0.798348
Target:  5'- cUCGcgGAUcacGGGcuucgGCGUGuuGCCGCCg -3'
miRNA:   3'- -GGCaaCUAaa-CCU-----UGCGCggCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14298 0.67 0.798348
Target:  5'- gCGUUGcgUggacgGGAGgGCGgCGgaaCCGCCg -3'
miRNA:   3'- gGCAACuaAa----CCUUgCGCgGC---GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 38875 0.67 0.798348
Target:  5'- gCUGgUGAUcgcgUGGAACuGCGauucaCCGCCGCa -3'
miRNA:   3'- -GGCaACUAa---ACCUUG-CGC-----GGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 24553 0.67 0.798348
Target:  5'- gCCGgcgUGAUccUGcuGAuCGCGuCCGUCGCCg -3'
miRNA:   3'- -GGCa--ACUAa-AC--CUuGCGC-GGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12995 0.69 0.696539
Target:  5'- cCCGcgcgUGAcgUGGGuguACGCGCaggaGCgCGCCa -3'
miRNA:   3'- -GGCa---ACUaaACCU---UGCGCGg---CG-GCGG- -5'
23937 3' -53.9 NC_005262.1 + 12794 0.69 0.685846
Target:  5'- cCCG-UGAgcaUUGGGcgGCGCGCaGCCGgCg -3'
miRNA:   3'- -GGCaACUa--AACCU--UGCGCGgCGGCgG- -5'
23937 3' -53.9 NC_005262.1 + 50628 0.7 0.642677
Target:  5'- cCUGUUGc--UGGAAa-UGUCGCCGCCg -3'
miRNA:   3'- -GGCAACuaaACCUUgcGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 63235 0.77 0.292388
Target:  5'- uCCGUUGAacccgUGGGcaauccucgGCGCcaucguggcaGCCGCCGCCu -3'
miRNA:   3'- -GGCAACUaa---ACCU---------UGCG----------CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 63309 0.76 0.314653
Target:  5'- gCGUcGAcgUGGAacacGCGCGCCGCguCGCCg -3'
miRNA:   3'- gGCAaCUaaACCU----UGCGCGGCG--GCGG- -5'
23937 3' -53.9 NC_005262.1 + 54828 0.76 0.330196
Target:  5'- gCCGaugGAUUUGGAccgacacgcaGCGCGCCGaCCGgCu -3'
miRNA:   3'- -GGCaa-CUAAACCU----------UGCGCGGC-GGCgG- -5'
23937 3' -53.9 NC_005262.1 + 42587 0.74 0.434926
Target:  5'- --------aUGGAACGCGCCGCCGg- -3'
miRNA:   3'- ggcaacuaaACCUUGCGCGGCGGCgg -5'
23937 3' -53.9 NC_005262.1 + 36624 0.73 0.473873
Target:  5'- gCgGUUcGGUUgcUGGAugGCGCCauguCCGCCg -3'
miRNA:   3'- -GgCAA-CUAA--ACCUugCGCGGc---GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12693 0.72 0.505224
Target:  5'- gCCGuUUGAgagcggauauuucgUGGAugGCGUC-CCGCCg -3'
miRNA:   3'- -GGC-AACUaa------------ACCUugCGCGGcGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 30603 0.72 0.524873
Target:  5'- gCCGcUGAag-GGcGCGaagaucgaGCCGCCGCCg -3'
miRNA:   3'- -GGCaACUaaaCCuUGCg-------CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 36720 0.71 0.567114
Target:  5'- uCCGUUGug--GGGGCugGCGCCGCgGgCg -3'
miRNA:   3'- -GGCAACuaaaCCUUG--CGCGGCGgCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.