miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 3' -53.9 NC_005262.1 + 1871 0.68 0.738599
Target:  5'- aCCGUUGGUUUcGAGC-CGgCGCaGCCc -3'
miRNA:   3'- -GGCAACUAAAcCUUGcGCgGCGgCGG- -5'
23937 3' -53.9 NC_005262.1 + 2370 0.66 0.868263
Target:  5'- ----cGAcgUGGAAuuccuCG-GCCGCCGCCu -3'
miRNA:   3'- ggcaaCUaaACCUU-----GCgCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 3873 0.71 0.599354
Target:  5'- gUCGUUGAUcUGG-AUGCGCacggGCuCGCCc -3'
miRNA:   3'- -GGCAACUAaACCuUGCGCGg---CG-GCGG- -5'
23937 3' -53.9 NC_005262.1 + 4020 0.67 0.803085
Target:  5'- gCGUUGAccugcgagcgGGAGacgaacgauccgacCGUuugGCCGCCGCCa -3'
miRNA:   3'- gGCAACUaaa-------CCUU--------------GCG---CGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6371 0.67 0.794529
Target:  5'- gCGcgGAUUgucagucaggucGAGCGUGCUGCCGUCg -3'
miRNA:   3'- gGCaaCUAAac----------CUUGCGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6539 0.67 0.798348
Target:  5'- cUCGcgGAUcacGGGcuucgGCGUGuuGCCGCCg -3'
miRNA:   3'- -GGCaaCUAaa-CCU-----UGCGCggCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 6565 0.66 0.834957
Target:  5'- aCC--UGAUUggcGGcGCGCGUCgcgauGCCGCCg -3'
miRNA:   3'- -GGcaACUAAa--CCuUGCGCGG-----CGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 7842 0.66 0.852057
Target:  5'- uCCGgcgUGAccaUGaucuGACG-GCCGCCGCCc -3'
miRNA:   3'- -GGCa--ACUaa-ACc---UUGCgCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 11636 0.68 0.738599
Target:  5'- gCGUcGAggccgGGGuaguuGCGCGCCGCCuCCc -3'
miRNA:   3'- gGCAaCUaaa--CCU-----UGCGCGGCGGcGG- -5'
23937 3' -53.9 NC_005262.1 + 12362 0.66 0.826092
Target:  5'- aCGUcgUGAc--GGuaucgcccuCGCGCgCGCCGCCg -3'
miRNA:   3'- gGCA--ACUaaaCCuu-------GCGCG-GCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12693 0.72 0.505224
Target:  5'- gCCGuUUGAgagcggauauuucgUGGAugGCGUC-CCGCCg -3'
miRNA:   3'- -GGC-AACUaa------------ACCUugCGCGGcGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 12794 0.69 0.685846
Target:  5'- cCCG-UGAgcaUUGGGcgGCGCGCaGCCGgCg -3'
miRNA:   3'- -GGCaACUa--AACCU--UGCGCGgCGGCgG- -5'
23937 3' -53.9 NC_005262.1 + 12904 0.66 0.859464
Target:  5'- gCGUucaggUGAUUgacGAGCGCGCCGUgcgauugCGUCg -3'
miRNA:   3'- gGCA-----ACUAAac-CUUGCGCGGCG-------GCGG- -5'
23937 3' -53.9 NC_005262.1 + 12995 0.69 0.696539
Target:  5'- cCCGcgcgUGAcgUGGGuguACGCGCaggaGCgCGCCa -3'
miRNA:   3'- -GGCa---ACUaaACCU---UGCGCGg---CG-GCGG- -5'
23937 3' -53.9 NC_005262.1 + 13814 0.66 0.860275
Target:  5'- aUCGgcg----GGAGCggGCGCCGCUGUCu -3'
miRNA:   3'- -GGCaacuaaaCCUUG--CGCGGCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14104 0.74 0.425481
Target:  5'- gCCGUcgcGGUUcaGGuugcGCGCGCCGCCGaCCa -3'
miRNA:   3'- -GGCAa--CUAAa-CCu---UGCGCGGCGGC-GG- -5'
23937 3' -53.9 NC_005262.1 + 14126 0.66 0.82249
Target:  5'- aCCGguacuuuUUGAgugGGAugGCGugcgccgggauuguCCGCCGCg -3'
miRNA:   3'- -GGC-------AACUaaaCCUugCGC--------------GGCGGCGg -5'
23937 3' -53.9 NC_005262.1 + 14298 0.67 0.798348
Target:  5'- gCGUUGcgUggacgGGAGgGCGgCGgaaCCGCCg -3'
miRNA:   3'- gGCAACuaAa----CCUUgCGCgGC---GGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14420 0.74 0.397897
Target:  5'- cCCGcggUGAU---GAACGCGCgCGUCGCCg -3'
miRNA:   3'- -GGCa--ACUAaacCUUGCGCG-GCGGCGG- -5'
23937 3' -53.9 NC_005262.1 + 14545 0.74 0.425481
Target:  5'- cUCGUUGAUcUGGucgcggaccucGCGCGCggacugcgCGCCGCCg -3'
miRNA:   3'- -GGCAACUAaACCu----------UGCGCG--------GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.