miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23940 5' -58.9 NC_005262.1 + 21940 1 0.002251
Target:  5'- gGUGCGGCACCACACGC-AGGCGGUCAg -3'
miRNA:   3'- -CACGCCGUGGUGUGCGuUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 5271 0.83 0.042123
Target:  5'- cGUGCaGCAgCACGgGCAGGGCGGUCGa -3'
miRNA:   3'- -CACGcCGUgGUGUgCGUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 59957 0.78 0.085435
Target:  5'- -aGCGGCACguCACGCGCGGGGCGcUCGg -3'
miRNA:   3'- caCGCCGUG--GUGUGCGUUCCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 27931 0.78 0.085435
Target:  5'- gGUGCGcGCGUCGCGCGCAcaaacaucuGGGCGGUCGc -3'
miRNA:   3'- -CACGC-CGUGGUGUGCGU---------UCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 9170 0.78 0.092883
Target:  5'- --cCGGCGCCuuCACGCAuGGCGGUCGg -3'
miRNA:   3'- cacGCCGUGGu-GUGCGUuCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 43486 0.75 0.160387
Target:  5'- -gGCGGCGaccguCUACGCggacgGCAAGGCGGUCGc -3'
miRNA:   3'- caCGCCGU-----GGUGUG-----CGUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 17544 0.74 0.164725
Target:  5'- -cGCGGU--CGCGCGCGAGGCGG-CAg -3'
miRNA:   3'- caCGCCGugGUGUGCGUUCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 47897 0.74 0.188029
Target:  5'- -cGCGGCGCacguCGCGCGCAcgcGGCGGaUCAg -3'
miRNA:   3'- caCGCCGUG----GUGUGCGUu--CCGCC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 5291 0.74 0.188029
Target:  5'- -cGUGGUcgAUCACGCGguCGAGGCGGUCGg -3'
miRNA:   3'- caCGCCG--UGGUGUGC--GUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 58837 0.74 0.188029
Target:  5'- cUGCGGCGCUucgGCACGCAGaucGGCGacGUCAc -3'
miRNA:   3'- cACGCCGUGG---UGUGCGUU---CCGC--CAGU- -5'
23940 5' -58.9 NC_005262.1 + 12323 0.73 0.219779
Target:  5'- aUGCGGCucguGCCGCAgCGCGcGGCGG-CAg -3'
miRNA:   3'- cACGCCG----UGGUGU-GCGUuCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 11091 0.72 0.249633
Target:  5'- -gGCGGC-CCGCugGCAcgcuuGGCGGggCAa -3'
miRNA:   3'- caCGCCGuGGUGugCGUu----CCGCCa-GU- -5'
23940 5' -58.9 NC_005262.1 + 52319 0.71 0.255992
Target:  5'- -cGCGGCccauguGCuCGCGCGCGAGcGCGGUa- -3'
miRNA:   3'- caCGCCG------UG-GUGUGCGUUC-CGCCAgu -5'
23940 5' -58.9 NC_005262.1 + 43915 0.71 0.261828
Target:  5'- uGUGCGGCGacuuugggccUCACuGCGCAGacugugcGGCGGUCGg -3'
miRNA:   3'- -CACGCCGU----------GGUG-UGCGUU-------CCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 34762 0.71 0.262483
Target:  5'- cGUGcCGGCGCCGCucgaGCucGGCGGaUCGg -3'
miRNA:   3'- -CAC-GCCGUGGUGug--CGuuCCGCC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 18128 0.71 0.273824
Target:  5'- aGUGCGGCACCAUGCGCucgaucuguucgacGAGcucGCGcGUCu -3'
miRNA:   3'- -CACGCCGUGGUGUGCG--------------UUC---CGC-CAGu -5'
23940 5' -58.9 NC_005262.1 + 40136 0.71 0.280676
Target:  5'- -gGCGGCAuCCACggauucACGCAGGuguauucgagguacGCGGUCAg -3'
miRNA:   3'- caCGCCGU-GGUG------UGCGUUC--------------CGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 18691 0.71 0.282758
Target:  5'- -cGCGGCACC-CGC-CGAGuugagcGCGGUCAa -3'
miRNA:   3'- caCGCCGUGGuGUGcGUUC------CGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 40234 0.71 0.282758
Target:  5'- cUGC-GC-CCGCGCGCGgcGGGCGGUUg -3'
miRNA:   3'- cACGcCGuGGUGUGCGU--UCCGCCAGu -5'
23940 5' -58.9 NC_005262.1 + 62720 0.71 0.289078
Target:  5'- -cGCGcacGCACCcugaucgGCGCGCu-GGCGGUCAg -3'
miRNA:   3'- caCGC---CGUGG-------UGUGCGuuCCGCCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.