miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23940 5' -58.9 NC_005262.1 + 4592 0.67 0.448978
Target:  5'- cGUGUGGC-CCGacuuCGCAAGGCGcUCc -3'
miRNA:   3'- -CACGCCGuGGUgu--GCGUUCCGCcAGu -5'
23940 5' -58.9 NC_005262.1 + 4698 0.67 0.458623
Target:  5'- -cGCGGCAuCCAgucguUGCGCAAGuGCGGg-- -3'
miRNA:   3'- caCGCCGU-GGU-----GUGCGUUC-CGCCagu -5'
23940 5' -58.9 NC_005262.1 + 5076 0.66 0.527927
Target:  5'- -gGCGGCGgCGCGUGCGAccggcucGGCGGUg- -3'
miRNA:   3'- caCGCCGUgGUGUGCGUU-------CCGCCAgu -5'
23940 5' -58.9 NC_005262.1 + 5271 0.83 0.042123
Target:  5'- cGUGCaGCAgCACGgGCAGGGCGGUCGa -3'
miRNA:   3'- -CACGcCGUgGUGUgCGUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 5291 0.74 0.188029
Target:  5'- -cGUGGUcgAUCACGCGguCGAGGCGGUCGg -3'
miRNA:   3'- caCGCCG--UGGUGUGC--GUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 5593 0.69 0.359208
Target:  5'- -gGCGGCGCCGCucucCGCAGGcgacGCGGa-- -3'
miRNA:   3'- caCGCCGUGGUGu---GCGUUC----CGCCagu -5'
23940 5' -58.9 NC_005262.1 + 6047 0.66 0.518645
Target:  5'- gGUGCGGCACgAUAcCGCAccacgGGGuUGcGUCAg -3'
miRNA:   3'- -CACGCCGUGgUGU-GCGU-----UCC-GC-CAGU- -5'
23940 5' -58.9 NC_005262.1 + 8270 0.67 0.49624
Target:  5'- -aGCGGCcgaggaagcugcCCGCGucgcuCGCGAGGCGGcCAa -3'
miRNA:   3'- caCGCCGu-----------GGUGU-----GCGUUCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 8408 0.66 0.539354
Target:  5'- aUGCGGCGCUcgaucugcuuGCGCGUGAucCGGUCGc -3'
miRNA:   3'- cACGCCGUGG----------UGUGCGUUccGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 8578 0.67 0.478239
Target:  5'- -cGCGGcCugCGCGacgaaGCGAcGGCGGUUg -3'
miRNA:   3'- caCGCC-GugGUGUg----CGUU-CCGCCAGu -5'
23940 5' -58.9 NC_005262.1 + 9170 0.78 0.092883
Target:  5'- --cCGGCGCCuuCACGCAuGGCGGUCGg -3'
miRNA:   3'- cacGCCGUGGu-GUGCGUuCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 9457 0.67 0.488201
Target:  5'- uGUGCGGCACCAUccUGCAcGGUauGGUg- -3'
miRNA:   3'- -CACGCCGUGGUGu-GCGUuCCG--CCAgu -5'
23940 5' -58.9 NC_005262.1 + 11091 0.72 0.249633
Target:  5'- -gGCGGC-CCGCugGCAcgcuuGGCGGggCAa -3'
miRNA:   3'- caCGCCGuGGUGugCGUu----CCGCCa-GU- -5'
23940 5' -58.9 NC_005262.1 + 11648 0.66 0.560336
Target:  5'- -gGCGGCGCCggcgucgcgcuGCACGCu-GGcCGG-CAg -3'
miRNA:   3'- caCGCCGUGG-----------UGUGCGuuCC-GCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 12243 0.66 0.518645
Target:  5'- -cGCGcGCgACCACgugguACGCGAGcCGGUCGc -3'
miRNA:   3'- caCGC-CG-UGGUG-----UGCGUUCcGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 12323 0.73 0.219779
Target:  5'- aUGCGGCucguGCCGCAgCGCGcGGCGG-CAg -3'
miRNA:   3'- cACGCCG----UGGUGU-GCGUuCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 14842 0.66 0.559281
Target:  5'- cUGCGGCGUCauGCugGCGaccaucuGGGCGGUa- -3'
miRNA:   3'- cACGCCGUGG--UGugCGU-------UCCGCCAgu -5'
23940 5' -58.9 NC_005262.1 + 15351 0.68 0.393586
Target:  5'- -cGCGGCAUaCGCGCGC---GUGGUCAu -3'
miRNA:   3'- caCGCCGUG-GUGUGCGuucCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 15695 0.66 0.536229
Target:  5'- -cGCGGCGCguCACaucaucgcgcgucgGCGCcGGGCGGcUCGu -3'
miRNA:   3'- caCGCCGUG--GUG--------------UGCGuUCCGCC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 16007 0.66 0.549814
Target:  5'- -cGCGGCACCgACGacgaGCA-GGCGaUCGu -3'
miRNA:   3'- caCGCCGUGG-UGUg---CGUuCCGCcAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.