miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23940 5' -58.9 NC_005262.1 + 43835 0.68 0.430029
Target:  5'- -cGCgGGCcgGCCGCGCGC--GGCGGUg- -3'
miRNA:   3'- caCG-CCG--UGGUGUGCGuuCCGCCAgu -5'
23940 5' -58.9 NC_005262.1 + 28165 0.7 0.31927
Target:  5'- -cGCGGCGCaacuGCGCGCGGcGGCcGUCGa -3'
miRNA:   3'- caCGCCGUGg---UGUGCGUU-CCGcCAGU- -5'
23940 5' -58.9 NC_005262.1 + 51418 0.69 0.342823
Target:  5'- cGUGCucGGCGgCGCGCGCGAgGGCGauaccGUCAc -3'
miRNA:   3'- -CACG--CCGUgGUGUGCGUU-CCGC-----CAGU- -5'
23940 5' -58.9 NC_005262.1 + 19236 0.69 0.359208
Target:  5'- -gGCGuGUACUcCGCGUucAGGCGGUCGa -3'
miRNA:   3'- caCGC-CGUGGuGUGCGu-UCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 43060 0.69 0.367603
Target:  5'- -gGcCGGCACCGCGCGCc--GCGG-CAg -3'
miRNA:   3'- caC-GCCGUGGUGUGCGuucCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 46005 0.68 0.393586
Target:  5'- -cGCGuucCugCACGCGCAAGGC-GUCGc -3'
miRNA:   3'- caCGCc--GugGUGUGCGUUCCGcCAGU- -5'
23940 5' -58.9 NC_005262.1 + 22081 0.68 0.402508
Target:  5'- cGUGUucGGCuCgCACACGCAc-GCGGUCAa -3'
miRNA:   3'- -CACG--CCGuG-GUGUGCGUucCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 21688 0.68 0.420732
Target:  5'- -gGCGGCGCCGCGCuGCuguacGCGGgCAc -3'
miRNA:   3'- caCGCCGUGGUGUG-CGuuc--CGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 49758 0.68 0.420732
Target:  5'- -gGCGGCGCC-CGCGCccGAGGCuccGGcCGc -3'
miRNA:   3'- caCGCCGUGGuGUGCG--UUCCG---CCaGU- -5'
23940 5' -58.9 NC_005262.1 + 20843 0.7 0.296952
Target:  5'- -cGCGGCACCcgcucuACACGaCGcAGGCaGUCAa -3'
miRNA:   3'- caCGCCGUGG------UGUGC-GU-UCCGcCAGU- -5'
23940 5' -58.9 NC_005262.1 + 25374 0.7 0.296952
Target:  5'- gGUGCGGCAUCAuCGCGCAGGauCGGg-- -3'
miRNA:   3'- -CACGCCGUGGU-GUGCGUUCc-GCCagu -5'
23940 5' -58.9 NC_005262.1 + 17490 0.7 0.296952
Target:  5'- -aGCGcGCGCCGCGCGCGAcGCG-UCGa -3'
miRNA:   3'- caCGC-CGUGGUGUGCGUUcCGCcAGU- -5'
23940 5' -58.9 NC_005262.1 + 43486 0.75 0.160387
Target:  5'- -gGCGGCGaccguCUACGCggacgGCAAGGCGGUCGc -3'
miRNA:   3'- caCGCCGU-----GGUGUG-----CGUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 17544 0.74 0.164725
Target:  5'- -cGCGGU--CGCGCGCGAGGCGG-CAg -3'
miRNA:   3'- caCGCCGugGUGUGCGUUCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 58837 0.74 0.188029
Target:  5'- cUGCGGCGCUucgGCACGCAGaucGGCGacGUCAc -3'
miRNA:   3'- cACGCCGUGG---UGUGCGUU---CCGC--CAGU- -5'
23940 5' -58.9 NC_005262.1 + 5291 0.74 0.188029
Target:  5'- -cGUGGUcgAUCACGCGguCGAGGCGGUCGg -3'
miRNA:   3'- caCGCCG--UGGUGUGC--GUUCCGCCAGU- -5'
23940 5' -58.9 NC_005262.1 + 12323 0.73 0.219779
Target:  5'- aUGCGGCucguGCCGCAgCGCGcGGCGG-CAg -3'
miRNA:   3'- cACGCCG----UGGUGU-GCGUuCCGCCaGU- -5'
23940 5' -58.9 NC_005262.1 + 11091 0.72 0.249633
Target:  5'- -gGCGGC-CCGCugGCAcgcuuGGCGGggCAa -3'
miRNA:   3'- caCGCCGuGGUGugCGUu----CCGCCa-GU- -5'
23940 5' -58.9 NC_005262.1 + 34762 0.71 0.262483
Target:  5'- cGUGcCGGCGCCGCucgaGCucGGCGGaUCGg -3'
miRNA:   3'- -CAC-GCCGUGGUGug--CGuuCCGCC-AGU- -5'
23940 5' -58.9 NC_005262.1 + 62720 0.71 0.289078
Target:  5'- -cGCGcacGCACCcugaucgGCGCGCu-GGCGGUCAg -3'
miRNA:   3'- caCGC---CGUGG-------UGUGCGuuCCGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.