miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 3' -54.4 NC_005262.1 + 20050 1.09 0.001701
Target:  5'- aCUUCGUGGUCAGCACGCGCACGAUCGc -3'
miRNA:   3'- -GAAGCACCAGUCGUGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 10454 0.78 0.202002
Target:  5'- gUUCGcgcGGUCGGCgagguagcgGCGCGCGCGGUCGc -3'
miRNA:   3'- gAAGCa--CCAGUCG---------UGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 19910 0.75 0.327074
Target:  5'- cCUUCGacuucauGUCGGcCAUGCGCGCGAUCGc -3'
miRNA:   3'- -GAAGCac-----CAGUC-GUGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 44141 0.75 0.33504
Target:  5'- --gCGUuccGGcCGGaCGCGCGCGCGAUCGg -3'
miRNA:   3'- gaaGCA---CCaGUC-GUGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 5863 0.73 0.421349
Target:  5'- --aCGcUGGUCAGCAcCGUGCggaugaaGCGAUCGa -3'
miRNA:   3'- gaaGC-ACCAGUCGU-GCGCG-------UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 16116 0.72 0.451003
Target:  5'- aCUUCc---UCGGCGCGCGCACGAUgGa -3'
miRNA:   3'- -GAAGcaccAGUCGUGCGCGUGCUAgC- -5'
23943 3' -54.4 NC_005262.1 + 35321 0.72 0.47073
Target:  5'- --gCGUGGUCAugaucgcgcaguGCAUGCGCAUcAUCGg -3'
miRNA:   3'- gaaGCACCAGU------------CGUGCGCGUGcUAGC- -5'
23943 3' -54.4 NC_005262.1 + 51417 0.72 0.480757
Target:  5'- --gCGUGcUCGGCgGCGCGCGCGAgggCGa -3'
miRNA:   3'- gaaGCACcAGUCG-UGCGCGUGCUa--GC- -5'
23943 3' -54.4 NC_005262.1 + 5269 0.72 0.480757
Target:  5'- -cUCGUGcagCAGCACGgGCaggGCGGUCGa -3'
miRNA:   3'- gaAGCACca-GUCGUGCgCG---UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 3712 0.72 0.490887
Target:  5'- -aUCGUGcccGUCAGCGCGuCGCGCGcggCGu -3'
miRNA:   3'- gaAGCAC---CAGUCGUGC-GCGUGCua-GC- -5'
23943 3' -54.4 NC_005262.1 + 9359 0.71 0.53233
Target:  5'- aCUUCc-GGUCGGCGCGCGCgGCGGc-- -3'
miRNA:   3'- -GAAGcaCCAGUCGUGCGCG-UGCUagc -5'
23943 3' -54.4 NC_005262.1 + 10231 0.7 0.574964
Target:  5'- -----cGGUCAGCGCGUGCGCGc-CGa -3'
miRNA:   3'- gaagcaCCAGUCGUGCGCGUGCuaGC- -5'
23943 3' -54.4 NC_005262.1 + 5289 0.7 0.585756
Target:  5'- -gUCGUGGUCGauCACGCGguCGAggCGg -3'
miRNA:   3'- gaAGCACCAGUc-GUGCGCguGCUa-GC- -5'
23943 3' -54.4 NC_005262.1 + 40463 0.7 0.585756
Target:  5'- --cCGUGGUCgAGCGCGUGCuCGugcgCGg -3'
miRNA:   3'- gaaGCACCAG-UCGUGCGCGuGCua--GC- -5'
23943 3' -54.4 NC_005262.1 + 33893 0.69 0.640114
Target:  5'- -aUCGUGcGUCGGCcgGCG-GCcCGAUCGg -3'
miRNA:   3'- gaAGCAC-CAGUCG--UGCgCGuGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 60401 0.69 0.651002
Target:  5'- -aUCGUcGG-CGGCAUgGCGCACGugGUCGa -3'
miRNA:   3'- gaAGCA-CCaGUCGUG-CGCGUGC--UAGC- -5'
23943 3' -54.4 NC_005262.1 + 36444 0.68 0.677044
Target:  5'- --aCGUGGUCGuucaagaagucuggcGCAUGgGCGCGcgCGa -3'
miRNA:   3'- gaaGCACCAGU---------------CGUGCgCGUGCuaGC- -5'
23943 3' -54.4 NC_005262.1 + 24029 0.68 0.683523
Target:  5'- -gUCGggaUGGUCGGCugGCgGCuuguCGAUCc -3'
miRNA:   3'- gaAGC---ACCAGUCGugCG-CGu---GCUAGc -5'
23943 3' -54.4 NC_005262.1 + 57137 0.68 0.683523
Target:  5'- -cUCGUGGaUCgAGgACgGCGaCGCGAUCGa -3'
miRNA:   3'- gaAGCACC-AG-UCgUG-CGC-GUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 48178 0.68 0.687833
Target:  5'- -aUCGUccGGuaauuUCGGCACGCgggacaguaauaaggGCGCGGUCGg -3'
miRNA:   3'- gaAGCA--CC-----AGUCGUGCG---------------CGUGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.