miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 3' -54.4 NC_005262.1 + 183 0.67 0.74594
Target:  5'- -gUCGUacagcagcgugccGGUgacgauccgCAGCGCGCGCACGAg-- -3'
miRNA:   3'- gaAGCA-------------CCA---------GUCGUGCGCGUGCUagc -5'
23943 3' -54.4 NC_005262.1 + 2027 0.68 0.704981
Target:  5'- -cUgGUcGGUCGGCGCGUGCuACGAg-- -3'
miRNA:   3'- gaAgCA-CCAGUCGUGCGCG-UGCUagc -5'
23943 3' -54.4 NC_005262.1 + 3712 0.72 0.490887
Target:  5'- -aUCGUGcccGUCAGCGCGuCGCGCGcggCGu -3'
miRNA:   3'- gaAGCAC---CAGUCGUGC-GCGUGCua-GC- -5'
23943 3' -54.4 NC_005262.1 + 3820 0.66 0.815637
Target:  5'- -aUCG-GGU--GCAUGCGCGCcuGAUCGa -3'
miRNA:   3'- gaAGCaCCAguCGUGCGCGUG--CUAGC- -5'
23943 3' -54.4 NC_005262.1 + 4109 0.66 0.824774
Target:  5'- --gCGUGG-CGGCACGC---CGAUCGu -3'
miRNA:   3'- gaaGCACCaGUCGUGCGcguGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 5269 0.72 0.480757
Target:  5'- -cUCGUGcagCAGCACGgGCaggGCGGUCGa -3'
miRNA:   3'- gaAGCACca-GUCGUGCgCG---UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 5289 0.7 0.585756
Target:  5'- -gUCGUGGUCGauCACGCGguCGAggCGg -3'
miRNA:   3'- gaAGCACCAGUc-GUGCGCguGCUa-GC- -5'
23943 3' -54.4 NC_005262.1 + 5863 0.73 0.421349
Target:  5'- --aCGcUGGUCAGCAcCGUGCggaugaaGCGAUCGa -3'
miRNA:   3'- gaaGC-ACCAGUCGU-GCGCG-------UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 7667 0.66 0.796807
Target:  5'- gUUCG-GGUC-GCuCG-GCGCGGUCGg -3'
miRNA:   3'- gAAGCaCCAGuCGuGCgCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 9359 0.71 0.53233
Target:  5'- aCUUCc-GGUCGGCGCGCGCgGCGGc-- -3'
miRNA:   3'- -GAAGcaCCAGUCGUGCGCG-UGCUagc -5'
23943 3' -54.4 NC_005262.1 + 10231 0.7 0.574964
Target:  5'- -----cGGUCAGCGCGUGCGCGc-CGa -3'
miRNA:   3'- gaagcaCCAGUCGUGCGCGUGCuaGC- -5'
23943 3' -54.4 NC_005262.1 + 10454 0.78 0.202002
Target:  5'- gUUCGcgcGGUCGGCgagguagcgGCGCGCGCGGUCGc -3'
miRNA:   3'- gAAGCa--CCAGUCG---------UGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 11918 0.67 0.777304
Target:  5'- uCUUCGUGaucgccuccaucGUCGggaacauggcGCACGCGCugGGgaUCGa -3'
miRNA:   3'- -GAAGCAC------------CAGU----------CGUGCGCGugCU--AGC- -5'
23943 3' -54.4 NC_005262.1 + 12254 0.67 0.740771
Target:  5'- --aCGUGGUacGCGagccggucgccguguUGCGCACGGUCGu -3'
miRNA:   3'- gaaGCACCAguCGU---------------GCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 13005 0.66 0.815637
Target:  5'- --aCGUGGgu-GUACGCGCAgGAgcgCGc -3'
miRNA:   3'- gaaGCACCaguCGUGCGCGUgCUa--GC- -5'
23943 3' -54.4 NC_005262.1 + 14540 0.66 0.815637
Target:  5'- ---aGUGccguGCAUGCGCugGAUCGg -3'
miRNA:   3'- gaagCACcaguCGUGCGCGugCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 16116 0.72 0.451003
Target:  5'- aCUUCc---UCGGCGCGCGCACGAUgGa -3'
miRNA:   3'- -GAAGcaccAGUCGUGCGCGUGCUAgC- -5'
23943 3' -54.4 NC_005262.1 + 17334 0.67 0.757211
Target:  5'- -gUCGUGGcCGGCGCG-GCAU--UCGg -3'
miRNA:   3'- gaAGCACCaGUCGUGCgCGUGcuAGC- -5'
23943 3' -54.4 NC_005262.1 + 17885 0.68 0.704981
Target:  5'- ----uUGaUCGGCGCGCGCAucCGGUCGg -3'
miRNA:   3'- gaagcACcAGUCGUGCGCGU--GCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 19791 0.66 0.815637
Target:  5'- --gCGUGGUCGucGCACauCGgGCGGUCGc -3'
miRNA:   3'- gaaGCACCAGU--CGUGc-GCgUGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.