miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 3' -54.4 NC_005262.1 + 44141 0.75 0.33504
Target:  5'- --gCGUuccGGcCGGaCGCGCGCGCGAUCGg -3'
miRNA:   3'- gaaGCA---CCaGUC-GUGCGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 183 0.67 0.74594
Target:  5'- -gUCGUacagcagcgugccGGUgacgauccgCAGCGCGCGCACGAg-- -3'
miRNA:   3'- gaAGCA-------------CCA---------GUCGUGCGCGUGCUagc -5'
23943 3' -54.4 NC_005262.1 + 41157 0.67 0.754151
Target:  5'- --cCGUG--CAGCGCGCGCaggagggcaccgccGCGAUCGc -3'
miRNA:   3'- gaaGCACcaGUCGUGCGCG--------------UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 58942 0.67 0.757211
Target:  5'- gCUUCucGGUCGGCGCGCaGCA--GUCGa -3'
miRNA:   3'- -GAAGcaCCAGUCGUGCG-CGUgcUAGC- -5'
23943 3' -54.4 NC_005262.1 + 11918 0.67 0.777304
Target:  5'- uCUUCGUGaucgccuccaucGUCGggaacauggcGCACGCGCugGGgaUCGa -3'
miRNA:   3'- -GAAGCAC------------CAGU----------CGUGCGCGugCU--AGC- -5'
23943 3' -54.4 NC_005262.1 + 56976 0.66 0.796807
Target:  5'- --gCGUGGUCGGCAagacCGCcuacgacaaGCGCGA-CGa -3'
miRNA:   3'- gaaGCACCAGUCGU----GCG---------CGUGCUaGC- -5'
23943 3' -54.4 NC_005262.1 + 13005 0.66 0.815637
Target:  5'- --aCGUGGgu-GUACGCGCAgGAgcgCGc -3'
miRNA:   3'- gaaGCACCaguCGUGCGCGUgCUa--GC- -5'
23943 3' -54.4 NC_005262.1 + 14540 0.66 0.815637
Target:  5'- ---aGUGccguGCAUGCGCugGAUCGg -3'
miRNA:   3'- gaagCACcaguCGUGCGCGugCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 19791 0.66 0.815637
Target:  5'- --gCGUGGUCGucGCACauCGgGCGGUCGc -3'
miRNA:   3'- gaaGCACCAGU--CGUGc-GCgUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 59238 0.67 0.74594
Target:  5'- -cUCGaGGagcugcugcacgcUCAGCACGCGCAgGAgCGa -3'
miRNA:   3'- gaAGCaCC-------------AGUCGUGCGCGUgCUaGC- -5'
23943 3' -54.4 NC_005262.1 + 23671 0.67 0.7314
Target:  5'- --cCGUGGaugccgcccgagCGGCGCgugugggucuaccgGCGCACGGUCGa -3'
miRNA:   3'- gaaGCACCa-----------GUCGUG--------------CGCGUGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 55025 0.68 0.694282
Target:  5'- --aCGcGGUCGGCGCGgGCAagacguucacgaUGAUCGc -3'
miRNA:   3'- gaaGCaCCAGUCGUGCgCGU------------GCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 5863 0.73 0.421349
Target:  5'- --aCGcUGGUCAGCAcCGUGCggaugaaGCGAUCGa -3'
miRNA:   3'- gaaGC-ACCAGUCGU-GCGCG-------UGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 16116 0.72 0.451003
Target:  5'- aCUUCc---UCGGCGCGCGCACGAUgGa -3'
miRNA:   3'- -GAAGcaccAGUCGUGCGCGUGCUAgC- -5'
23943 3' -54.4 NC_005262.1 + 51417 0.72 0.480757
Target:  5'- --gCGUGcUCGGCgGCGCGCGCGAgggCGa -3'
miRNA:   3'- gaaGCACcAGUCG-UGCGCGUGCUa--GC- -5'
23943 3' -54.4 NC_005262.1 + 5289 0.7 0.585756
Target:  5'- -gUCGUGGUCGauCACGCGguCGAggCGg -3'
miRNA:   3'- gaAGCACCAGUc-GUGCGCguGCUa-GC- -5'
23943 3' -54.4 NC_005262.1 + 33893 0.69 0.640114
Target:  5'- -aUCGUGcGUCGGCcgGCG-GCcCGAUCGg -3'
miRNA:   3'- gaAGCAC-CAGUCG--UGCgCGuGCUAGC- -5'
23943 3' -54.4 NC_005262.1 + 60401 0.69 0.651002
Target:  5'- -aUCGUcGG-CGGCAUgGCGCACGugGUCGa -3'
miRNA:   3'- gaAGCA-CCaGUCGUG-CGCGUGC--UAGC- -5'
23943 3' -54.4 NC_005262.1 + 36444 0.68 0.677044
Target:  5'- --aCGUGGUCGuucaagaagucuggcGCAUGgGCGCGcgCGa -3'
miRNA:   3'- gaaGCACCAGU---------------CGUGCgCGUGCuaGC- -5'
23943 3' -54.4 NC_005262.1 + 48178 0.68 0.687833
Target:  5'- -aUCGUccGGuaauuUCGGCACGCgggacaguaauaaggGCGCGGUCGg -3'
miRNA:   3'- gaAGCA--CC-----AGUCGUGCG---------------CGUGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.