miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 3' -54.8 NC_005262.1 + 19802 1.1 0.001356
Target:  5'- aCGAUUAAGCGACCAUCGCCCGCGCGAu -3'
miRNA:   3'- -GCUAAUUCGCUGGUAGCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 54840 0.81 0.130693
Target:  5'- cCGGaUGGGUggaGugCGUCGCCCGCGCGAg -3'
miRNA:   3'- -GCUaAUUCG---CugGUAGCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 12583 0.78 0.190855
Target:  5'- cCGGU---GCGAUCAgcaUCGCCCGCGCGGc -3'
miRNA:   3'- -GCUAauuCGCUGGU---AGCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 21346 0.77 0.24764
Target:  5'- gCGAUcgAGGCGGCCAagGCCgCGCGCa- -3'
miRNA:   3'- -GCUAa-UUCGCUGGUagCGG-GCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 6826 0.75 0.288019
Target:  5'- gCGGUcuuGcCGACCAcgcccgcgaacUCGCCCGCGCGGa -3'
miRNA:   3'- -GCUAauuC-GCUGGU-----------AGCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 45441 0.75 0.288019
Target:  5'- ---aUGGGCGggcucggaACCAUCGCCgGCGCGGg -3'
miRNA:   3'- gcuaAUUCGC--------UGGUAGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 24871 0.75 0.302584
Target:  5'- aCGAcaGAGCG-CCAUCGaUCUGCGCGAg -3'
miRNA:   3'- -GCUaaUUCGCuGGUAGC-GGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 54195 0.75 0.302584
Target:  5'- cCGAgc--GCGugCuccagCGCCCGCGCGAg -3'
miRNA:   3'- -GCUaauuCGCugGua---GCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 11016 0.75 0.310077
Target:  5'- aCGAgcgAGGCGGCUGUCGCgcaagaCCGCGCGc -3'
miRNA:   3'- -GCUaa-UUCGCUGGUAGCG------GGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 40214 0.75 0.317711
Target:  5'- uCGGUUuucacGGCGAUCuccugCGCCCGCGCGc -3'
miRNA:   3'- -GCUAAu----UCGCUGGua---GCGGGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 20182 0.74 0.35798
Target:  5'- cCGGUgccGGCGAgCGUCaCCUGCGCGAu -3'
miRNA:   3'- -GCUAau-UCGCUgGUAGcGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 38046 0.73 0.383804
Target:  5'- gCGGgccgUGAGCGGCUugccgGCCUGCGCGAu -3'
miRNA:   3'- -GCUa---AUUCGCUGGuag--CGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 3661 0.73 0.392683
Target:  5'- cCGGUUGuacucGCGGCCGUCGCUgGcCGUGAc -3'
miRNA:   3'- -GCUAAUu----CGCUGGUAGCGGgC-GCGCU- -5'
23944 3' -54.8 NC_005262.1 + 25349 0.73 0.410835
Target:  5'- gCGAc-GAGCGuGCCGUCGUCCGgCGUGAu -3'
miRNA:   3'- -GCUaaUUCGC-UGGUAGCGGGC-GCGCU- -5'
23944 3' -54.8 NC_005262.1 + 53313 0.72 0.426667
Target:  5'- aCGAUggacaaggcGAGCGACCGcgcgcgccgcuaccUCGCcgaCCGCGCGAa -3'
miRNA:   3'- -GCUAa--------UUCGCUGGU--------------AGCG---GGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 4797 0.72 0.447683
Target:  5'- gGAUcgGAGcCGGCCGcguagcgcugguuUCGCCgGCGCGAc -3'
miRNA:   3'- gCUAa-UUC-GCUGGU-------------AGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 7291 0.72 0.458404
Target:  5'- cCGAUUcGAGCGGCaCGUU-CUCGCGCGAg -3'
miRNA:   3'- -GCUAA-UUCGCUG-GUAGcGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 31143 0.71 0.47824
Target:  5'- aGcgUucGCaGACCugAUCGCCCGCGCa- -3'
miRNA:   3'- gCuaAuuCG-CUGG--UAGCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 31951 0.71 0.47824
Target:  5'- gCGGUguGGCGACgagcaaggCAUCGCUCGCaGCGAc -3'
miRNA:   3'- -GCUAauUCGCUG--------GUAGCGGGCG-CGCU- -5'
23944 3' -54.8 NC_005262.1 + 32033 0.71 0.488316
Target:  5'- gCGAUgcGGCggauguugugGACCGUgCGCuuGCGCGAc -3'
miRNA:   3'- -GCUAauUCG----------CUGGUA-GCGggCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.