miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 3' -54.8 NC_005262.1 + 890 0.67 0.753908
Target:  5'- aGAUUGcGCG-CCAgcUCGUCgGCGCGc -3'
miRNA:   3'- gCUAAUuCGCuGGU--AGCGGgCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 1869 0.7 0.550649
Target:  5'- uCGcgUAGGUGAagccauccgccCCAUUGCCCGUGCc- -3'
miRNA:   3'- -GCuaAUUCGCU-----------GGUAGCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 2290 0.67 0.743659
Target:  5'- cCGGUcGAGCGAgaUCAUuuccgacuguucCGgCCGCGCGAa -3'
miRNA:   3'- -GCUAaUUCGCU--GGUA------------GCgGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 2514 0.67 0.722843
Target:  5'- cCGAUaGAGCGGucgUCAUCGCgUgGCGUGAa -3'
miRNA:   3'- -GCUAaUUCGCU---GGUAGCG-GgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 3267 0.67 0.743659
Target:  5'- gCGGUcgAAGuCGACCGUCacgcucuuggcgGCCUGCGCc- -3'
miRNA:   3'- -GCUAa-UUC-GCUGGUAG------------CGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 3661 0.73 0.392683
Target:  5'- cCGGUUGuacucGCGGCCGUCGCUgGcCGUGAc -3'
miRNA:   3'- -GCUAAUu----CGCUGGUAGCGGgC-GCGCU- -5'
23944 3' -54.8 NC_005262.1 + 4093 0.69 0.626062
Target:  5'- -----cGGCGACguagCGCCCGCGUGGc -3'
miRNA:   3'- gcuaauUCGCUGgua-GCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 4146 0.68 0.66513
Target:  5'- gGGUUGucGGCGACCAgCGCgaggagagacuggCGCGCGAg -3'
miRNA:   3'- gCUAAU--UCGCUGGUaGCGg------------GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 4797 0.72 0.447683
Target:  5'- gGAUcgGAGcCGGCCGcguagcgcugguuUCGCCgGCGCGAc -3'
miRNA:   3'- gCUAa-UUC-GCUGGU-------------AGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 5313 0.67 0.753908
Target:  5'- gCGGUcgGAGCuGGCCGgcaggagcuUCGCaCCGCGCu- -3'
miRNA:   3'- -GCUAa-UUCG-CUGGU---------AGCG-GGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 5617 0.69 0.636926
Target:  5'- uCGAUguucGCGACC-UCGCCCgaguuGCGCa- -3'
miRNA:   3'- -GCUAauu-CGCUGGuAGCGGG-----CGCGcu -5'
23944 3' -54.8 NC_005262.1 + 5704 0.67 0.7333
Target:  5'- uCGAUcAGGCGGuuGUUGCCguCGCGCa- -3'
miRNA:   3'- -GCUAaUUCGCUggUAGCGG--GCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 6826 0.75 0.288019
Target:  5'- gCGGUcuuGcCGACCAcgcccgcgaacUCGCCCGCGCGGa -3'
miRNA:   3'- -GCUAauuC-GCUGGU-----------AGCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 7180 0.66 0.803118
Target:  5'- uCGAgucguAGCuGCCcuucGUCGCCCacGCGCGGa -3'
miRNA:   3'- -GCUaau--UCGcUGG----UAGCGGG--CGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 7291 0.72 0.458404
Target:  5'- cCGAUUcGAGCGGCaCGUU-CUCGCGCGAg -3'
miRNA:   3'- -GCUAA-UUCGCUG-GUAGcGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 8275 0.66 0.803118
Target:  5'- cCGAggAAGCuGCCcgcGUCGCUCGCgagGCGGc -3'
miRNA:   3'- -GCUaaUUCGcUGG---UAGCGGGCG---CGCU- -5'
23944 3' -54.8 NC_005262.1 + 8758 0.66 0.803118
Target:  5'- ------cGCGAUCAUCgugaacgucuuGCCCGCGCcGAc -3'
miRNA:   3'- gcuaauuCGCUGGUAG-----------CGGGCGCG-CU- -5'
23944 3' -54.8 NC_005262.1 + 8937 0.68 0.647786
Target:  5'- cCGAUUAuuUGACCcUCGCgCGgGCGAc -3'
miRNA:   3'- -GCUAAUucGCUGGuAGCGgGCgCGCU- -5'
23944 3' -54.8 NC_005262.1 + 9739 0.67 0.7333
Target:  5'- aCGGUcacGGUGccgUCGUCGCCCGUGCGc -3'
miRNA:   3'- -GCUAau-UCGCu--GGUAGCGGGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 9938 0.66 0.783884
Target:  5'- cCGGcUUGAGCGcgaucugcuuGCCGUcCGCgCCGCGCc- -3'
miRNA:   3'- -GCU-AAUUCGC----------UGGUA-GCG-GGCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.