miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23944 3' -54.8 NC_005262.1 + 62017 0.69 0.604358
Target:  5'- ----aAGGCaauAUCAUCGCCgCGCGCGAu -3'
miRNA:   3'- gcuaaUUCGc--UGGUAGCGG-GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 40505 0.71 0.519113
Target:  5'- aGAac-GGC-ACCAUCGaCCUGCGCGAc -3'
miRNA:   3'- gCUaauUCGcUGGUAGC-GGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 29654 0.7 0.528504
Target:  5'- ----cGAGCGgcaugccGCCcgCGCCCGCGCa- -3'
miRNA:   3'- gcuaaUUCGC-------UGGuaGCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 1869 0.7 0.550649
Target:  5'- uCGcgUAGGUGAagccauccgccCCAUUGCCCGUGCc- -3'
miRNA:   3'- -GCuaAUUCGCU-----------GGUAGCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 38408 0.7 0.550649
Target:  5'- cCGAU--GGCGAcaCCAUCcagGCCgGCGCGGu -3'
miRNA:   3'- -GCUAauUCGCU--GGUAG---CGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 11436 0.7 0.571997
Target:  5'- aGGUgc-GCGACaCGccgCGCCCGCGCa- -3'
miRNA:   3'- gCUAauuCGCUG-GUa--GCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 16625 0.7 0.582747
Target:  5'- uCGAgcUGGGCGAuaUCGUCGUgCUGCGCGAg -3'
miRNA:   3'- -GCUa-AUUCGCU--GGUAGCG-GGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 44692 0.69 0.593537
Target:  5'- cCGAUccgAAcGUGG-CAUCGCCgCGCGCGAg -3'
miRNA:   3'- -GCUAa--UU-CGCUgGUAGCGG-GCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 47564 0.69 0.593537
Target:  5'- ----aAGGCGA-CGUCGCCCGacgaaGCGAa -3'
miRNA:   3'- gcuaaUUCGCUgGUAGCGGGCg----CGCU- -5'
23944 3' -54.8 NC_005262.1 + 28797 0.71 0.508757
Target:  5'- uCGAcc--GUGACCucgCGCCCGCGCa- -3'
miRNA:   3'- -GCUaauuCGCUGGua-GCGGGCGCGcu -5'
23944 3' -54.8 NC_005262.1 + 50311 0.71 0.49849
Target:  5'- gGAUUGAGgagcCGGCCGcagCGCCCGcCGCGc -3'
miRNA:   3'- gCUAAUUC----GCUGGUa--GCGGGC-GCGCu -5'
23944 3' -54.8 NC_005262.1 + 36131 0.71 0.488316
Target:  5'- aCGGcgAGGCGAgCAcCGCCaGCGCGAu -3'
miRNA:   3'- -GCUaaUUCGCUgGUaGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 45441 0.75 0.288019
Target:  5'- ---aUGGGCGggcucggaACCAUCGCCgGCGCGGg -3'
miRNA:   3'- gcuaAUUCGC--------UGGUAGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 54195 0.75 0.302584
Target:  5'- cCGAgc--GCGugCuccagCGCCCGCGCGAg -3'
miRNA:   3'- -GCUaauuCGCugGua---GCGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 11016 0.75 0.310077
Target:  5'- aCGAgcgAGGCGGCUGUCGCgcaagaCCGCGCGc -3'
miRNA:   3'- -GCUaa-UUCGCUGGUAGCG------GGCGCGCu -5'
23944 3' -54.8 NC_005262.1 + 3661 0.73 0.392683
Target:  5'- cCGGUUGuacucGCGGCCGUCGCUgGcCGUGAc -3'
miRNA:   3'- -GCUAAUu----CGCUGGUAGCGGgC-GCGCU- -5'
23944 3' -54.8 NC_005262.1 + 53313 0.72 0.426667
Target:  5'- aCGAUggacaaggcGAGCGACCGcgcgcgccgcuaccUCGCcgaCCGCGCGAa -3'
miRNA:   3'- -GCUAa--------UUCGCUGGU--------------AGCG---GGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 4797 0.72 0.447683
Target:  5'- gGAUcgGAGcCGGCCGcguagcgcugguuUCGCCgGCGCGAc -3'
miRNA:   3'- gCUAa-UUC-GCUGGU-------------AGCGGgCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 7291 0.72 0.458404
Target:  5'- cCGAUUcGAGCGGCaCGUU-CUCGCGCGAg -3'
miRNA:   3'- -GCUAA-UUCGCUG-GUAGcGGGCGCGCU- -5'
23944 3' -54.8 NC_005262.1 + 31951 0.71 0.47824
Target:  5'- gCGGUguGGCGACgagcaaggCAUCGCUCGCaGCGAc -3'
miRNA:   3'- -GCUAauUCGCUG--------GUAGCGGGCG-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.