Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23945 | 3' | -58.3 | NC_005262.1 | + | 7791 | 0.66 | 0.646407 |
Target: 5'- gCGGUGAUGCGCugCUCGAgC-GCcuuCUGGu -3' miRNA: 3'- -GCCACUGCGCG--GAGUUgGgCGu--GACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 199 | 0.66 | 0.646407 |
Target: 5'- cCGGUGACGauCCgCAGCgCGCGCa-- -3' miRNA: 3'- -GCCACUGCgcGGaGUUGgGCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 35943 | 0.66 | 0.646407 |
Target: 5'- cCGuGUGaACGCGCCU--AUCCGCG-UGGu -3' miRNA: 3'- -GC-CAC-UGCGCGGAguUGGGCGUgACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 10761 | 0.66 | 0.625267 |
Target: 5'- aCGGuUGugGUGa-UCcGCCCGCGCcGGg -3' miRNA: 3'- -GCC-ACugCGCggAGuUGGGCGUGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 40371 | 0.66 | 0.625267 |
Target: 5'- aCGGcucgaUGACGCGgCUCAugcuGCCCGcCGCa-- -3' miRNA: 3'- -GCC-----ACUGCGCgGAGU----UGGGC-GUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 41111 | 0.66 | 0.614701 |
Target: 5'- gCGGUcGAgGCGCgUC--UgCGCACUGGu -3' miRNA: 3'- -GCCA-CUgCGCGgAGuuGgGCGUGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 17253 | 0.66 | 0.614701 |
Target: 5'- gCGGgagcGGCG-GCCg--GCgCCGCGCUGGg -3' miRNA: 3'- -GCCa---CUGCgCGGaguUG-GGCGUGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 16643 | 0.66 | 0.614701 |
Target: 5'- uGGUG-CGCGCCUC-GCCgGuCGCg-- -3' miRNA: 3'- gCCACuGCGCGGAGuUGGgC-GUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 43617 | 0.66 | 0.604148 |
Target: 5'- aGGUGACGCucGCCggcACCgGCgcagaACUGGc -3' miRNA: 3'- gCCACUGCG--CGGaguUGGgCG-----UGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 5258 | 0.66 | 0.593618 |
Target: 5'- uGGUGGaaCGCCUCGugCagcaGCACgGGc -3' miRNA: 3'- gCCACUgcGCGGAGUugGg---CGUGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 54295 | 0.66 | 0.593618 |
Target: 5'- -cGUGGCGCGCCUCucgaacauGAgCCGC-CaGGa -3' miRNA: 3'- gcCACUGCGCGGAG--------UUgGGCGuGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 16500 | 0.67 | 0.583119 |
Target: 5'- gGGcGAgGCGCUg-GGCgCUGCGCUGGg -3' miRNA: 3'- gCCaCUgCGCGGagUUG-GGCGUGACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 46435 | 0.67 | 0.583119 |
Target: 5'- aGG-GGCcCGCCgcgCcGCCCGCGCcGGa -3' miRNA: 3'- gCCaCUGcGCGGa--GuUGGGCGUGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 34015 | 0.67 | 0.572656 |
Target: 5'- gGGUGcCGCGCCgu--CCgGCACUa- -3' miRNA: 3'- gCCACuGCGCGGaguuGGgCGUGAcc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 24935 | 0.67 | 0.562239 |
Target: 5'- gCGG-GAUGCGCa-CAugCCGCGC-GGc -3' miRNA: 3'- -GCCaCUGCGCGgaGUugGGCGUGaCC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 2462 | 0.67 | 0.562239 |
Target: 5'- aCGGUGGacguugagcaUGCGCgUgGugCCGCGCuUGGc -3' miRNA: 3'- -GCCACU----------GCGCGgAgUugGGCGUG-ACC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 32834 | 0.67 | 0.551874 |
Target: 5'- cCGGcGACGUcggcgacaagGUUUCGGCCCGCACgugcGGc -3' miRNA: 3'- -GCCaCUGCG----------CGGAGUUGGGCGUGa---CC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 14221 | 0.67 | 0.551874 |
Target: 5'- aCGGcgGGCGCGaUgUCGACCaCGCACgagcaGGa -3' miRNA: 3'- -GCCa-CUGCGC-GgAGUUGG-GCGUGa----CC- -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 17255 | 0.67 | 0.541567 |
Target: 5'- aGGaGACGCGCCuguUCGAgCUGCGCg-- -3' miRNA: 3'- gCCaCUGCGCGG---AGUUgGGCGUGacc -5' |
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23945 | 3' | -58.3 | NC_005262.1 | + | 50584 | 0.67 | 0.541567 |
Target: 5'- uGGcgGACGCGCCgguuGCgCGCAC-GGa -3' miRNA: 3'- gCCa-CUGCGCGGagu-UGgGCGUGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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