miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 5' -50.4 NC_005262.1 + 19517 1.16 0.001422
Target:  5'- aGGCGAACGCUGCGGUCAGAAAAUCGCg -3'
miRNA:   3'- -CCGCUUGCGACGCCAGUCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 13480 0.8 0.287106
Target:  5'- cGGCGGGCGCUGCGGcCGGcuccucAAUcCGCg -3'
miRNA:   3'- -CCGCUUGCGACGCCaGUCuu----UUA-GCG- -5'
23945 5' -50.4 NC_005262.1 + 42772 0.79 0.350522
Target:  5'- cGGC-AGCGCUGUGGUgcGAAAAUCGUa -3'
miRNA:   3'- -CCGcUUGCGACGCCAguCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 24893 0.78 0.367856
Target:  5'- cGCGAGCGCaagaaauacUGCGG-CGGuGAAUCGCa -3'
miRNA:   3'- cCGCUUGCG---------ACGCCaGUCuUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 52972 0.78 0.39494
Target:  5'- cGGCGGACGCgcaugcGCuGGUCGuGAucGUCGCg -3'
miRNA:   3'- -CCGCUUGCGa-----CG-CCAGU-CUuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 14298 0.77 0.423279
Target:  5'- cGGCGAucGCGCUGCGcgcaccGcCGGAGAAUgCGCg -3'
miRNA:   3'- -CCGCU--UGCGACGC------CaGUCUUUUA-GCG- -5'
23945 5' -50.4 NC_005262.1 + 29435 0.75 0.514987
Target:  5'- aGGCGAaggcccgcaAgGCUGCGG-CAGAggcgcAGGUCGCc -3'
miRNA:   3'- -CCGCU---------UgCGACGCCaGUCU-----UUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 27017 0.75 0.546273
Target:  5'- aGUGAGCGUaacUGCGGUCGGGcucacaaaugcggAAAUCGUc -3'
miRNA:   3'- cCGCUUGCG---ACGCCAGUCU-------------UUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 21942 0.75 0.547363
Target:  5'- uGCGGcaccacACGCagGCGGUCAGAGAggGUCGg -3'
miRNA:   3'- cCGCU------UGCGa-CGCCAGUCUUU--UAGCg -5'
23945 5' -50.4 NC_005262.1 + 53233 0.75 0.558302
Target:  5'- cGCGGuACGCUGCGGcugcgcgCGGccGGUCGCg -3'
miRNA:   3'- cCGCU-UGCGACGCCa------GUCuuUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 11016 0.74 0.591452
Target:  5'- aGCGGcCGUaGCGGUCGGGGAAgaugccguUCGCg -3'
miRNA:   3'- cCGCUuGCGaCGCCAGUCUUUU--------AGCG- -5'
23945 5' -50.4 NC_005262.1 + 61418 0.74 0.591452
Target:  5'- aGGCGAAgGCgGCGGcCgAGGAAuuccacGUCGCg -3'
miRNA:   3'- -CCGCUUgCGaCGCCaG-UCUUU------UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 36818 0.74 0.591452
Target:  5'- cGGCGGGCGUgagcgaUGCcauuucuucgucGGUCGGGAuguGGUCGCg -3'
miRNA:   3'- -CCGCUUGCG------ACG------------CCAGUCUU---UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 32179 0.74 0.624918
Target:  5'- aGGCGGcgGCgGCGG-CAGAAGGUCGg -3'
miRNA:   3'- -CCGCUugCGaCGCCaGUCUUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 40884 0.73 0.6361
Target:  5'- cGGCGAGCGCguaGCaGUCuuccgcgaucGAGGAUCGUg -3'
miRNA:   3'- -CCGCUUGCGa--CGcCAGu---------CUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 30848 0.73 0.658442
Target:  5'- -aCGGugGUUGcCGGUCGGAGcGAUCGUg -3'
miRNA:   3'- ccGCUugCGAC-GCCAGUCUU-UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 30931 0.73 0.679574
Target:  5'- cGGCGAACGCucggcgccgcacgUGCGGgccGAAAccuuGUCGCc -3'
miRNA:   3'- -CCGCUUGCG-------------ACGCCaguCUUU----UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 11656 0.73 0.680682
Target:  5'- cGGCGucGCGCUGCacgcuggccGG-CAGAGcuUCGCg -3'
miRNA:   3'- -CCGCu-UGCGACG---------CCaGUCUUuuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 60406 0.73 0.680682
Target:  5'- cGGCGGcaugGCGCacGUGGUCG--AGAUCGCg -3'
miRNA:   3'- -CCGCU----UGCGa-CGCCAGUcuUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 5933 0.72 0.702732
Target:  5'- cGCGGAUGCcGCGGuUCAGcuucUCGCg -3'
miRNA:   3'- cCGCUUGCGaCGCC-AGUCuuuuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.