miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 5' -50.4 NC_005262.1 + 987 0.69 0.869172
Target:  5'- uGGCGAccugcgggGCGggGCGGUgUAGAGcuuGUCGCc -3'
miRNA:   3'- -CCGCU--------UGCgaCGCCA-GUCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 1509 0.7 0.806804
Target:  5'- cGGagGGAgGCUGCGG-CGGAAcguAUUGCg -3'
miRNA:   3'- -CCg-CUUgCGACGCCaGUCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 1751 0.68 0.88483
Target:  5'- aGGCGAuGCGCcGCaucgaGGa-GGAGGAUCGCg -3'
miRNA:   3'- -CCGCU-UGCGaCG-----CCagUCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 1842 0.66 0.963404
Target:  5'- aGGCu-GCGCaUGCGGUUgccugcuuGGUCGCg -3'
miRNA:   3'- -CCGcuUGCG-ACGCCAGucuu----UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 2014 0.7 0.816362
Target:  5'- aGGCGAaaACGC-GCuGGUCGGucgg-CGCg -3'
miRNA:   3'- -CCGCU--UGCGaCG-CCAGUCuuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 2395 0.69 0.843798
Target:  5'- cGGCG-GC-CUGCGGaagCGGGAuGUCGUg -3'
miRNA:   3'- -CCGCuUGcGACGCCa--GUCUUuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 2793 0.66 0.959594
Target:  5'- cGGCGAGCGgcuugaUGaCGGUCGGcacggccgacAGGAaCGCa -3'
miRNA:   3'- -CCGCUUGCg-----AC-GCCAGUC----------UUUUaGCG- -5'
23945 5' -50.4 NC_005262.1 + 3249 0.67 0.931012
Target:  5'- cGGCGucAGCGUgcccuUGCGGUCG--AAGUCGa -3'
miRNA:   3'- -CCGC--UUGCG-----ACGCCAGUcuUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 3631 0.68 0.892262
Target:  5'- uGGcCGAGCGCcuucacgGCGGcCGGGuacuUCGCc -3'
miRNA:   3'- -CC-GCUUGCGa------CGCCaGUCUuuu-AGCG- -5'
23945 5' -50.4 NC_005262.1 + 4329 0.66 0.951175
Target:  5'- cGGCGAGC-CUcGCGGgccguccaUCGGcc-GUCGCg -3'
miRNA:   3'- -CCGCUUGcGA-CGCC--------AGUCuuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 4386 0.69 0.852497
Target:  5'- aGGuCGAGCGUUGCGcGUgcGAu-GUCGCg -3'
miRNA:   3'- -CC-GCUUGCGACGC-CAguCUuuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 4876 0.66 0.955519
Target:  5'- aGCGcGCGCcauCGGUCGGGccgccggccuGAUCGCg -3'
miRNA:   3'- cCGCuUGCGac-GCCAGUCUu---------UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 5293 0.68 0.899422
Target:  5'- uGGuCGAucACGCggucgagGCGGUCGGAgcuggccggcagGAGcuUCGCa -3'
miRNA:   3'- -CC-GCU--UGCGa------CGCCAGUCU------------UUU--AGCG- -5'
23945 5' -50.4 NC_005262.1 + 5933 0.72 0.702732
Target:  5'- cGCGGAUGCcGCGGuUCAGcuucUCGCg -3'
miRNA:   3'- cCGCUUGCGaCGCC-AGUCuuuuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 6099 0.68 0.906305
Target:  5'- cGGUGAuccgcACGUUGCGGaacggCGGcacAGUCGCc -3'
miRNA:   3'- -CCGCU-----UGCGACGCCa----GUCuu-UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 6461 0.71 0.787131
Target:  5'- cGGCGAGaCGCcggcaucgacGCGGgccCAGAAGuUCGCa -3'
miRNA:   3'- -CCGCUU-GCGa---------CGCCa--GUCUUUuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 6997 0.68 0.88483
Target:  5'- cGGCGAcgcuucgaacaGCGCgGCGGcuucgguggacgUCAGGuccuUCGCg -3'
miRNA:   3'- -CCGCU-----------UGCGaCGCC------------AGUCUuuu-AGCG- -5'
23945 5' -50.4 NC_005262.1 + 7482 0.67 0.931012
Target:  5'- aGCGGGCuaUccGCGGUCcuGAAcugGAUCGCg -3'
miRNA:   3'- cCGCUUGcgA--CGCCAGu-CUU---UUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 7766 0.71 0.77704
Target:  5'- cGGCGGGCcCuUGCGGUU-GcgGAUCGCg -3'
miRNA:   3'- -CCGCUUGcG-ACGCCAGuCuuUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 8289 0.67 0.941657
Target:  5'- cGCGucgcuCGCgagGCGGcCaagaaggugaAGAAGAUCGCa -3'
miRNA:   3'- cCGCuu---GCGa--CGCCaG----------UCUUUUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.