miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23945 5' -50.4 NC_005262.1 + 47277 0.69 0.869172
Target:  5'- aGGCGAaaacggACGCcGCGG-C-GAAGAUCGg -3'
miRNA:   3'- -CCGCU------UGCGaCGCCaGuCUUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 1509 0.7 0.806804
Target:  5'- cGGagGGAgGCUGCGG-CGGAAcguAUUGCg -3'
miRNA:   3'- -CCg-CUUgCGACGCCaGUCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 62737 0.7 0.825721
Target:  5'- cGGC--GCGCUgGCGGUCAGcgc--CGCa -3'
miRNA:   3'- -CCGcuUGCGA-CGCCAGUCuuuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 31186 0.7 0.825721
Target:  5'- cGGCGAcgcgacgaucACGCUcGCcgacaaGUCAGGcaAGAUCGCg -3'
miRNA:   3'- -CCGCU----------UGCGA-CGc-----CAGUCU--UUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 61467 0.7 0.829406
Target:  5'- cGGCGaAGCGCUagacgacaucuucgcGCGGcCGGAAcAGUCGg -3'
miRNA:   3'- -CCGC-UUGCGA---------------CGCCaGUCUU-UUAGCg -5'
23945 5' -50.4 NC_005262.1 + 55779 0.7 0.83487
Target:  5'- cGGCGAcauCGUUGCGGgcuucgagCAGAAcgcCGCc -3'
miRNA:   3'- -CCGCUu--GCGACGCCa-------GUCUUuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 2395 0.69 0.843798
Target:  5'- cGGCG-GC-CUGCGGaagCGGGAuGUCGUg -3'
miRNA:   3'- -CCGCuUGcGACGCCa--GUCUUuUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 45011 0.69 0.852497
Target:  5'- cGGCGGACGCcaacacGCGG-CAGAuggcgaGCa -3'
miRNA:   3'- -CCGCUUGCGa-----CGCCaGUCUuuuag-CG- -5'
23945 5' -50.4 NC_005262.1 + 987 0.69 0.869172
Target:  5'- uGGCGAccugcgggGCGggGCGGUgUAGAGcuuGUCGCc -3'
miRNA:   3'- -CCGCU--------UGCgaCGCCA-GUCUUu--UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 56962 0.7 0.797057
Target:  5'- gGGCGAGuuCGCgggcGUGGUCGGcAAGAcCGCc -3'
miRNA:   3'- -CCGCUU--GCGa---CGCCAGUC-UUUUaGCG- -5'
23945 5' -50.4 NC_005262.1 + 6461 0.71 0.787131
Target:  5'- cGGCGAGaCGCcggcaucgacGCGGgccCAGAAGuUCGCa -3'
miRNA:   3'- -CCGCUU-GCGa---------CGCCa--GUCUUUuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 15600 0.71 0.756404
Target:  5'- cGCGAggaGCGCgUGCGG-CAGGAg--CGCa -3'
miRNA:   3'- cCGCU---UGCG-ACGCCaGUCUUuuaGCG- -5'
23945 5' -50.4 NC_005262.1 + 61418 0.74 0.591452
Target:  5'- aGGCGAAgGCgGCGGcCgAGGAAuuccacGUCGCg -3'
miRNA:   3'- -CCGCUUgCGaCGCCaG-UCUUU------UAGCG- -5'
23945 5' -50.4 NC_005262.1 + 32179 0.74 0.624918
Target:  5'- aGGCGGcgGCgGCGG-CAGAAGGUCGg -3'
miRNA:   3'- -CCGCUugCGaCGCCaGUCUUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 11656 0.73 0.680682
Target:  5'- cGGCGucGCGCUGCacgcuggccGG-CAGAGcuUCGCg -3'
miRNA:   3'- -CCGCu-UGCGACG---------CCaGUCUUuuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 60406 0.73 0.680682
Target:  5'- cGGCGGcaugGCGCacGUGGUCG--AGAUCGCg -3'
miRNA:   3'- -CCGCU----UGCGa-CGCCAGUcuUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 5933 0.72 0.702732
Target:  5'- cGCGGAUGCcGCGGuUCAGcuucUCGCg -3'
miRNA:   3'- cCGCUUGCGaCGCC-AGUCuuuuAGCG- -5'
23945 5' -50.4 NC_005262.1 + 23569 0.72 0.724497
Target:  5'- cGCc-GCGC-GCGGgcgCAGGAGAUCGCc -3'
miRNA:   3'- cCGcuUGCGaCGCCa--GUCUUUUAGCG- -5'
23945 5' -50.4 NC_005262.1 + 17335 0.71 0.745883
Target:  5'- cGCGAGCGCgucGCGGcgaUCcgcgAGAAGAUCGa -3'
miRNA:   3'- cCGCUUGCGa--CGCC---AG----UCUUUUAGCg -5'
23945 5' -50.4 NC_005262.1 + 12532 0.71 0.756404
Target:  5'- cGCGAucgccuccAUGUUGCGG-CGGcAGGUCGCg -3'
miRNA:   3'- cCGCU--------UGCGACGCCaGUCuUUUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.