miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 3' -53.2 NC_005262.1 + 15073 0.9 0.045876
Target:  5'- uCCGACACGUUgUcCCAGAACGACGCGu -3'
miRNA:   3'- -GGCUGUGCAAgAcGGUCUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 20869 0.8 0.217669
Target:  5'- aCGACGCGcgC-GCCGGAcgACGACGCGa -3'
miRNA:   3'- gGCUGUGCaaGaCGGUCU--UGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 34502 0.78 0.267213
Target:  5'- gCGGCGCGcgacUUCUGCgAG-ACGACGCGg -3'
miRNA:   3'- gGCUGUGC----AAGACGgUCuUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 14021 0.77 0.302584
Target:  5'- uCCGGCGCGgcagCgGCCGGAGCcucgGGCGCGg -3'
miRNA:   3'- -GGCUGUGCaa--GaCGGUCUUG----CUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 48168 0.77 0.333399
Target:  5'- cCCGACGCGUUCaGCCGcgccuCGAUGCGc -3'
miRNA:   3'- -GGCUGUGCAAGaCGGUcuu--GCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 56271 0.75 0.420104
Target:  5'- gCCGACGCGccgccgaacCUGCCcGAugGAUGCGu -3'
miRNA:   3'- -GGCUGUGCaa-------GACGGuCUugCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 30058 0.74 0.47824
Target:  5'- aCCGACGaug-CUGCCGGcgacGACGACGCc -3'
miRNA:   3'- -GGCUGUgcaaGACGGUC----UUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 61344 0.74 0.47824
Target:  5'- gCCGAU-CGUgaaagacuUCUggcGCCAGAACGACGUGa -3'
miRNA:   3'- -GGCUGuGCA--------AGA---CGGUCUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 43058 0.73 0.508757
Target:  5'- aCCgGGCAgGggucgagCUGCC-GAGCGACGCGa -3'
miRNA:   3'- -GG-CUGUgCaa-----GACGGuCUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 35810 0.73 0.529551
Target:  5'- aUCGACGCGaacagcaUCauggGCCGGAGCGGCGuCGg -3'
miRNA:   3'- -GGCUGUGCa------AGa---CGGUCUUGCUGC-GC- -5'
23950 3' -53.2 NC_005262.1 + 29772 0.72 0.540065
Target:  5'- aCCGcCcgGCGUagUGCCGG-ACGGCGCGg -3'
miRNA:   3'- -GGCuG--UGCAagACGGUCuUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 32714 0.71 0.589216
Target:  5'- gCGACaucaucgagcucgGCGUgCUGCCGgccgaccacuccguGAGCGACGCGg -3'
miRNA:   3'- gGCUG-------------UGCAaGACGGU--------------CUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 47962 0.71 0.604358
Target:  5'- gCCGcauCACGUaCUGCUGGAucGCGAgCGCGa -3'
miRNA:   3'- -GGCu--GUGCAaGACGGUCU--UGCU-GCGC- -5'
23950 3' -53.2 NC_005262.1 + 4809 0.71 0.615203
Target:  5'- gCCGcguagcGCugGUUUcGCCGGcGCGACGCa -3'
miRNA:   3'- -GGC------UGugCAAGaCGGUCuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 61785 0.71 0.626062
Target:  5'- aCCGACcagcGCGUUUUcGCCuGcGCGGCGCa -3'
miRNA:   3'- -GGCUG----UGCAAGA-CGGuCuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 54386 0.71 0.626062
Target:  5'- uCCGACGCGUacCUGUCGGGcaACGuCGUGc -3'
miRNA:   3'- -GGCUGUGCAa-GACGGUCU--UGCuGCGC- -5'
23950 3' -53.2 NC_005262.1 + 4665 0.71 0.636926
Target:  5'- gCGACGCGgcccgGCCGGuucgccuCGGCGCGg -3'
miRNA:   3'- gGCUGUGCaaga-CGGUCuu-----GCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 36808 0.71 0.636926
Target:  5'- gCGGCGCGcUCggcggGCguGAGCGAUGCc -3'
miRNA:   3'- gGCUGUGCaAGa----CGguCUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 17200 0.71 0.647786
Target:  5'- uCUGugGCG-UCUGCggcgAGGACGGCGCu -3'
miRNA:   3'- -GGCugUGCaAGACGg---UCUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 30459 0.7 0.658633
Target:  5'- gCGGCACGg--UGCCGcGcAGCGACGCa -3'
miRNA:   3'- gGCUGUGCaagACGGU-C-UUGCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.