miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 3' -53.2 NC_005262.1 + 39786 0.68 0.77799
Target:  5'- cCCGACGCGUaucucggguugaacCUGCaauaccugcuGAugGACGCGa -3'
miRNA:   3'- -GGCUGUGCAa-------------GACGgu--------CUugCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 44129 0.7 0.690986
Target:  5'- aUCGGCguucccGCGUUCcgGCCGGAcGCGcGCGCGa -3'
miRNA:   3'- -GGCUG------UGCAAGa-CGGUCU-UGC-UGCGC- -5'
23950 3' -53.2 NC_005262.1 + 24234 0.69 0.7333
Target:  5'- gCCGAUugGUUgaGUaagaucgggaGGGGCGACGCa -3'
miRNA:   3'- -GGCUGugCAAgaCGg---------UCUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 63664 0.69 0.742628
Target:  5'- aCUGGCugGaaUUGCCGGcgacggcGACGACGCa -3'
miRNA:   3'- -GGCUGugCaaGACGGUC-------UUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 31068 0.69 0.742628
Target:  5'- gCCGACGCGcUC-GCCgaccugaAGGGCGAgcCGCGg -3'
miRNA:   3'- -GGCUGUGCaAGaCGG-------UCUUGCU--GCGC- -5'
23950 3' -53.2 NC_005262.1 + 26262 0.69 0.753908
Target:  5'- -gGACACGauguucCUGCCGc-ACGACGCGg -3'
miRNA:   3'- ggCUGUGCaa----GACGGUcuUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 53059 0.69 0.753908
Target:  5'- aCGACGCG--CUGaCCGGcGCGAuCGCGa -3'
miRNA:   3'- gGCUGUGCaaGAC-GGUCuUGCU-GCGC- -5'
23950 3' -53.2 NC_005262.1 + 51189 0.68 0.764035
Target:  5'- aCGACGCGgcggCccGCUGGAGCcGCGCGg -3'
miRNA:   3'- gGCUGUGCaa--Ga-CGGUCUUGcUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 63062 0.68 0.764035
Target:  5'- gCCGGCACGUcaUCgcggGCgAGuauGCGGCgGCGu -3'
miRNA:   3'- -GGCUGUGCA--AGa---CGgUCu--UGCUG-CGC- -5'
23950 3' -53.2 NC_005262.1 + 24886 0.7 0.690986
Target:  5'- gCCGGCGCGUgacaggcgagcUCgGCCAGccgGAgGACGCc -3'
miRNA:   3'- -GGCUGUGCA-----------AGaCGGUC---UUgCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 6555 0.7 0.680243
Target:  5'- uUCGGCGUGUUgCcGCCGacGAGCGGCGCGa -3'
miRNA:   3'- -GGCUGUGCAA-GaCGGU--CUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 45325 0.7 0.669455
Target:  5'- aCGGCGCGaugcaaggUCUGCaa-GGCGGCGCGg -3'
miRNA:   3'- gGCUGUGCa-------AGACGgucUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 30058 0.74 0.47824
Target:  5'- aCCGACGaug-CUGCCGGcgacGACGACGCc -3'
miRNA:   3'- -GGCUGUgcaaGACGGUC----UUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 61344 0.74 0.47824
Target:  5'- gCCGAU-CGUgaaagacuUCUggcGCCAGAACGACGUGa -3'
miRNA:   3'- -GGCUGuGCA--------AGA---CGGUCUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 35810 0.73 0.529551
Target:  5'- aUCGACGCGaacagcaUCauggGCCGGAGCGGCGuCGg -3'
miRNA:   3'- -GGCUGUGCa------AGa---CGGUCUUGCUGC-GC- -5'
23950 3' -53.2 NC_005262.1 + 29772 0.72 0.540065
Target:  5'- aCCGcCcgGCGUagUGCCGG-ACGGCGCGg -3'
miRNA:   3'- -GGCuG--UGCAagACGGUCuUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 32714 0.71 0.589216
Target:  5'- gCGACaucaucgagcucgGCGUgCUGCCGgccgaccacuccguGAGCGACGCGg -3'
miRNA:   3'- gGCUG-------------UGCAaGACGGU--------------CUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 4809 0.71 0.615203
Target:  5'- gCCGcguagcGCugGUUUcGCCGGcGCGACGCa -3'
miRNA:   3'- -GGC------UGugCAAGaCGGUCuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 54386 0.71 0.626062
Target:  5'- uCCGACGCGUacCUGUCGGGcaACGuCGUGc -3'
miRNA:   3'- -GGCUGUGCAa-GACGGUCU--UGCuGCGC- -5'
23950 3' -53.2 NC_005262.1 + 61785 0.71 0.626062
Target:  5'- aCCGACcagcGCGUUUUcGCCuGcGCGGCGCa -3'
miRNA:   3'- -GGCUG----UGCAAGA-CGGuCuUGCUGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.