miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 3' -53.2 NC_005262.1 + 522 0.67 0.847983
Target:  5'- gCCGGCcgucaagcagGCGgcggCUGCCAcGAUGGCGCc -3'
miRNA:   3'- -GGCUG----------UGCaa--GACGGUcUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 836 0.7 0.680243
Target:  5'- -aGcCGCGUgUCgGCCGGaAGCGACGCGc -3'
miRNA:   3'- ggCuGUGCA-AGaCGGUC-UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 1694 0.7 0.669455
Target:  5'- gCGACGCGgu-UGCCGcGGcgGCGACGCa -3'
miRNA:   3'- gGCUGUGCaagACGGU-CU--UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 2034 0.66 0.864445
Target:  5'- gUCGGCGCGUgcuacgagcUCUaccCCAGcauccACGACGCGg -3'
miRNA:   3'- -GGCUGUGCA---------AGAc--GGUCu----UGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 2981 0.66 0.887356
Target:  5'- gCCGGCGCaaacUCUGCgacagCGGAACG-CGCa -3'
miRNA:   3'- -GGCUGUGca--AGACG-----GUCUUGCuGCGc -5'
23950 3' -53.2 NC_005262.1 + 4562 0.66 0.872327
Target:  5'- gCGGCGCa-UCUcgcGCCAGcGGCGGCGCu -3'
miRNA:   3'- gGCUGUGcaAGA---CGGUC-UUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 4665 0.71 0.636926
Target:  5'- gCGACGCGgcccgGCCGGuucgccuCGGCGCGg -3'
miRNA:   3'- gGCUGUGCaaga-CGGUCuu-----GCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 4809 0.71 0.615203
Target:  5'- gCCGcguagcGCugGUUUcGCCGGcGCGACGCa -3'
miRNA:   3'- -GGC------UGugCAAGaCGGUCuUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 5111 0.66 0.887356
Target:  5'- cCCGGuuCACGaugcCUGCCAugcgcgacGGGCGGCGCu -3'
miRNA:   3'- -GGCU--GUGCaa--GACGGU--------CUUGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 5188 0.66 0.887356
Target:  5'- gCgGGCGCGggCgcgGCCGGcGCGAC-CGa -3'
miRNA:   3'- -GgCUGUGCaaGa--CGGUCuUGCUGcGC- -5'
23950 3' -53.2 NC_005262.1 + 6555 0.7 0.680243
Target:  5'- uUCGGCGUGUUgCcGCCGacGAGCGGCGCGa -3'
miRNA:   3'- -GGCUGUGCAA-GaCGGU--CUUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 6598 0.66 0.887356
Target:  5'- aCCGGCAgGUccgggUCgaGCgGGAGCGACacgaGCGg -3'
miRNA:   3'- -GGCUGUgCA-----AGa-CGgUCUUGCUG----CGC- -5'
23950 3' -53.2 NC_005262.1 + 7300 0.68 0.793583
Target:  5'- gCGGCACGUUCUcgcGCgAGuACGGCcCGg -3'
miRNA:   3'- gGCUGUGCAAGA---CGgUCuUGCUGcGC- -5'
23950 3' -53.2 NC_005262.1 + 7675 0.66 0.894492
Target:  5'- gCGGCACGccaaagaUCUGUgAGAGCuGCGCc -3'
miRNA:   3'- gGCUGUGCa------AGACGgUCUUGcUGCGc -5'
23950 3' -53.2 NC_005262.1 + 8002 0.69 0.743659
Target:  5'- gCCGGCgGCGUUCUGCUcGAagcccgcaACGAUGUc -3'
miRNA:   3'- -GGCUG-UGCAAGACGGuCU--------UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 8388 0.67 0.830638
Target:  5'- gCCGGCGCucgagCUGCUcGAuGCGGCGCu -3'
miRNA:   3'- -GGCUGUGcaa--GACGGuCU-UGCUGCGc -5'
23950 3' -53.2 NC_005262.1 + 10174 0.66 0.887356
Target:  5'- gCCGAUccugaagucCGUUacCUGCCgAGcGGCGACGCGg -3'
miRNA:   3'- -GGCUGu--------GCAA--GACGG-UC-UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 10445 0.66 0.872327
Target:  5'- gCCGAuCAgGUUCgcgcgGUCGGcgagguAGCGGCGCGc -3'
miRNA:   3'- -GGCU-GUgCAAGa----CGGUC------UUGCUGCGC- -5'
23950 3' -53.2 NC_005262.1 + 11152 0.68 0.803118
Target:  5'- gCG-CACGUUCUGCUcu-GCGGuCGCGc -3'
miRNA:   3'- gGCuGUGCAAGACGGucuUGCU-GCGC- -5'
23950 3' -53.2 NC_005262.1 + 12417 0.68 0.792621
Target:  5'- -aGGCGCGgcCUugGCCGGcgucgcgGACGGCGCGg -3'
miRNA:   3'- ggCUGUGCaaGA--CGGUC-------UUGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.