miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 5' -62.5 NC_005262.1 + 15108 1.09 0.00025
Target:  5'- cGGCGCGGCGUCCGGCUGGAACGCGCUg -3'
miRNA:   3'- -CCGCGCCGCAGGCCGACCUUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 19656 0.85 0.019341
Target:  5'- cGCGCGcGCGUCCGGCcGGAACGCGg- -3'
miRNA:   3'- cCGCGC-CGCAGGCCGaCCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 52394 0.82 0.031009
Target:  5'- cGGCGCGGCGcggcUUCGGCgUGGAgccGCGCGCg -3'
miRNA:   3'- -CCGCGCCGC----AGGCCG-ACCU---UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 33638 0.79 0.048195
Target:  5'- cGGCGCaGGUGUCCgaGGCUGacGAGCGCGCc -3'
miRNA:   3'- -CCGCG-CCGCAGG--CCGAC--CUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 43848 0.78 0.056641
Target:  5'- cGCGCGGCGgugcgCCGGCaGGAccucggcgcgaucGCGCGCa -3'
miRNA:   3'- cCGCGCCGCa----GGCCGaCCU-------------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 5081 0.77 0.068716
Target:  5'- cGGCGCGuGCGaCCGGCUcGGcgguGCGCGCc -3'
miRNA:   3'- -CCGCGC-CGCaGGCCGA-CCu---UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 13802 0.77 0.076575
Target:  5'- cGGCGCGGCuUCauCGGCgGGAGCGgGCg -3'
miRNA:   3'- -CCGCGCCGcAG--GCCGaCCUUGCgCGa -5'
23950 5' -62.5 NC_005262.1 + 17342 0.76 0.07867
Target:  5'- cGGCGCGGCauucggGUCCGGCgcgGGcGGCGCGg- -3'
miRNA:   3'- -CCGCGCCG------CAGGCCGa--CC-UUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 51192 0.74 0.114374
Target:  5'- -aCGCGGCGgCCcGCUGGAGcCGCGCg -3'
miRNA:   3'- ccGCGCCGCaGGcCGACCUU-GCGCGa -5'
23950 5' -62.5 NC_005262.1 + 4830 0.74 0.117436
Target:  5'- aGGcCGcCGGCGgCCGGCUGGuucgacugcuGCGCGCc -3'
miRNA:   3'- -CC-GC-GCCGCaGGCCGACCu---------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 36240 0.74 0.121531
Target:  5'- uGCGCGGCGUCCucgccggGGCUgagcucgcccucgucGGuGCGCGCg -3'
miRNA:   3'- cCGCGCCGCAGG-------CCGA---------------CCuUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 60743 0.73 0.148619
Target:  5'- uGGCuCGGCGaa-GGCUGGGagACGCGCUc -3'
miRNA:   3'- -CCGcGCCGCaggCCGACCU--UGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 44131 0.73 0.148619
Target:  5'- cGGCGUucccGCGuUCCGGCcGGAcGCGCGCg -3'
miRNA:   3'- -CCGCGc---CGC-AGGCCGaCCU-UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 12417 0.72 0.16059
Target:  5'- aGGCGCGGCcuuggCCGGCgucgcGGAcgGCGCGgUg -3'
miRNA:   3'- -CCGCGCCGca---GGCCGa----CCU--UGCGCgA- -5'
23950 5' -62.5 NC_005262.1 + 36865 0.72 0.16059
Target:  5'- cGGauagGCGGCGaaUCCGGCUcgGGAucguCGCGCg -3'
miRNA:   3'- -CCg---CGCCGC--AGGCCGA--CCUu---GCGCGa -5'
23950 5' -62.5 NC_005262.1 + 14008 0.72 0.176996
Target:  5'- cGGUGCaggGGCGUCCGGCgcggcagcggccGGAGCcucggGCGCg -3'
miRNA:   3'- -CCGCG---CCGCAGGCCGa-----------CCUUG-----CGCGa -5'
23950 5' -62.5 NC_005262.1 + 12594 0.72 0.1779
Target:  5'- cGGCGaGGCGUCgCGGau-GAGCGCGCc -3'
miRNA:   3'- -CCGCgCCGCAG-GCCgacCUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 40243 0.72 0.1779
Target:  5'- cGCGCGGCGggCGGUUGGucagucUGCGCg -3'
miRNA:   3'- cCGCGCCGCagGCCGACCuu----GCGCGa -5'
23950 5' -62.5 NC_005262.1 + 21555 0.71 0.182479
Target:  5'- aGCGCGGCGcUCGGCaucGGAAC-CGCg -3'
miRNA:   3'- cCGCGCCGCaGGCCGa--CCUUGcGCGa -5'
23950 5' -62.5 NC_005262.1 + 19284 0.71 0.187163
Target:  5'- aGCGCGGCGaUCaGGCUGGcccagAugGCGUUu -3'
miRNA:   3'- cCGCGCCGC-AGgCCGACC-----UugCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.