miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 5' -62.5 NC_005262.1 + 3989 0.7 0.217535
Target:  5'- uGGCGCcuGCGggCCGGUgcccucgaGGAACGCGUUg -3'
miRNA:   3'- -CCGCGc-CGCa-GGCCGa-------CCUUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 4595 0.67 0.341979
Target:  5'- gGGCGUGaGCG-CCcGCaGGAACGgGCg -3'
miRNA:   3'- -CCGCGC-CGCaGGcCGaCCUUGCgCGa -5'
23950 5' -62.5 NC_005262.1 + 4659 0.66 0.425584
Target:  5'- cGCGCGGCGacgcggcCCGGCcGGuucgccucGGCGCGgUa -3'
miRNA:   3'- cCGCGCCGCa------GGCCGaCC--------UUGCGCgA- -5'
23950 5' -62.5 NC_005262.1 + 4830 0.74 0.117436
Target:  5'- aGGcCGcCGGCGgCCGGCUGGuucgacugcuGCGCGCc -3'
miRNA:   3'- -CC-GC-GCCGCaGGCCGACCu---------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 5081 0.77 0.068716
Target:  5'- cGGCGCGuGCGaCCGGCUcGGcgguGCGCGCc -3'
miRNA:   3'- -CCGCGC-CGCaGGCCGA-CCu---UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 5190 0.67 0.341979
Target:  5'- gGGCGCgGGCGcggCCGGCgcgaccGAGgGCGUa -3'
miRNA:   3'- -CCGCG-CCGCa--GGCCGac----CUUgCGCGa -5'
23950 5' -62.5 NC_005262.1 + 5352 0.67 0.349786
Target:  5'- cGCGCacgccugccggGGCGUCCuugacgGGCaGGGACGCGg- -3'
miRNA:   3'- cCGCG-----------CCGCAGG------CCGaCCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 7013 0.71 0.206452
Target:  5'- aGCGCGGCGgcUUCGG-UGGAcgucagguccuucGCGCGCa -3'
miRNA:   3'- cCGCGCCGC--AGGCCgACCU-------------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 11087 0.66 0.39069
Target:  5'- aGCGCGGCcucGUCCGGCgucGGccGGCG-GCc -3'
miRNA:   3'- cCGCGCCG---CAGGCCGa--CC--UUGCgCGa -5'
23950 5' -62.5 NC_005262.1 + 11464 0.68 0.319321
Target:  5'- cGGCGauacGCGUCCGGCgccuuguuccGGAGCGCu-- -3'
miRNA:   3'- -CCGCgc--CGCAGGCCGa---------CCUUGCGcga -5'
23950 5' -62.5 NC_005262.1 + 11642 0.7 0.240052
Target:  5'- cGGCucgGCGGCG-CCGGCgu---CGCGCUg -3'
miRNA:   3'- -CCG---CGCCGCaGGCCGaccuuGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 11769 0.7 0.240052
Target:  5'- uGGCGCGGC--CCGacCUGG-GCGCGCUc -3'
miRNA:   3'- -CCGCGCCGcaGGCc-GACCuUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 12417 0.72 0.16059
Target:  5'- aGGCGCGGCcuuggCCGGCgucgcGGAcgGCGCGgUg -3'
miRNA:   3'- -CCGCGCCGca---GGCCGa----CCU--UGCGCgA- -5'
23950 5' -62.5 NC_005262.1 + 12594 0.72 0.1779
Target:  5'- cGGCGaGGCGUCgCGGau-GAGCGCGCc -3'
miRNA:   3'- -CCGCgCCGCAG-GCCgacCUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 12617 0.67 0.373958
Target:  5'- gGGcCGCcGCGUCguCGGCUGccugcuGCGCGCUc -3'
miRNA:   3'- -CC-GCGcCGCAG--GCCGACcu----UGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 12805 0.67 0.3343
Target:  5'- uGgGCGGCGcgcagCCGGCgcgugaagaaGGAGCGCGg- -3'
miRNA:   3'- cCgCGCCGCa----GGCCGa---------CCUUGCGCga -5'
23950 5' -62.5 NC_005262.1 + 13509 0.68 0.304852
Target:  5'- cGCGCGGcCGUcacgggcucggCCGGC-GcGGGCGCGCc -3'
miRNA:   3'- cCGCGCC-GCA-----------GGCCGaC-CUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 13689 0.66 0.416687
Target:  5'- cGCGCGGUG-CUGGCgcgugaGGucgaagugccuGACGUGCUg -3'
miRNA:   3'- cCGCGCCGCaGGCCGa-----CC-----------UUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 13727 0.66 0.416687
Target:  5'- cGGCGCaGCGgccuucgucUCCGGCUucgucucgGGAGCagccgGCGCc -3'
miRNA:   3'- -CCGCGcCGC---------AGGCCGA--------CCUUG-----CGCGa -5'
23950 5' -62.5 NC_005262.1 + 13802 0.77 0.076575
Target:  5'- cGGCGCGGCuUCauCGGCgGGAGCGgGCg -3'
miRNA:   3'- -CCGCGCCGcAG--GCCGaCCUUGCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.