miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23950 5' -62.5 NC_005262.1 + 14314 0.68 0.290207
Target:  5'- aGgGCGGCGgaaccgCCGaGCUGGGcggcgaaguugcgACGUGCUu -3'
miRNA:   3'- cCgCGCCGCa-----GGC-CGACCU-------------UGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 53844 0.7 0.234246
Target:  5'- cGGCGCGGCGcggaCGGCaagcaGAuCGCGCUc -3'
miRNA:   3'- -CCGCGCCGCag--GCCGac---CUuGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 11769 0.7 0.240052
Target:  5'- uGGCGCGGC--CCGacCUGG-GCGCGCUc -3'
miRNA:   3'- -CCGCGCCGcaGGCc-GACCuUGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 11642 0.7 0.240052
Target:  5'- cGGCucgGCGGCG-CCGGCgu---CGCGCUg -3'
miRNA:   3'- -CCG---CGCCGCaGGCCGaccuuGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 22368 0.69 0.245978
Target:  5'- uGGUGCGGaggguGUCCGGCgcGGAuCGCGa- -3'
miRNA:   3'- -CCGCGCCg----CAGGCCGa-CCUuGCGCga -5'
23950 5' -62.5 NC_005262.1 + 28860 0.69 0.252024
Target:  5'- aGGUcgGCGGCGUCaCGgacgagauGCUGGGACGCa-- -3'
miRNA:   3'- -CCG--CGCCGCAG-GC--------CGACCUUGCGcga -5'
23950 5' -62.5 NC_005262.1 + 56731 0.69 0.270898
Target:  5'- aGGCGuCGGCGUUCGacaUGGccgcCGCGCUg -3'
miRNA:   3'- -CCGC-GCCGCAGGCcg-ACCuu--GCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 46399 0.69 0.270898
Target:  5'- aGGCGCGccuCGUCgGGCUGGGcC-CGCa -3'
miRNA:   3'- -CCGCGCc--GCAGgCCGACCUuGcGCGa -5'
23950 5' -62.5 NC_005262.1 + 58566 0.68 0.284101
Target:  5'- cGGCGagaagcugauCGGCacgCCGGCaUGGAAUGgGCUg -3'
miRNA:   3'- -CCGC----------GCCGca-GGCCG-ACCUUGCgCGA- -5'
23950 5' -62.5 NC_005262.1 + 15589 0.7 0.22134
Target:  5'- aGGCGCGcgcgcgcgaggagcGCGUgCGGCaGGAGCGCa-- -3'
miRNA:   3'- -CCGCGC--------------CGCAgGCCGaCCUUGCGcga -5'
23950 5' -62.5 NC_005262.1 + 17600 0.7 0.212195
Target:  5'- cGGCGCaGCGcgCgGaGCUGGAGCGCcaGCa -3'
miRNA:   3'- -CCGCGcCGCa-GgC-CGACCUUGCG--CGa -5'
23950 5' -62.5 NC_005262.1 + 38229 0.71 0.206968
Target:  5'- cGGCGCagacGGCugccGUCUGGUUGGGA-GCGCg -3'
miRNA:   3'- -CCGCG----CCG----CAGGCCGACCUUgCGCGa -5'
23950 5' -62.5 NC_005262.1 + 43848 0.78 0.056641
Target:  5'- cGCGCGGCGgugcgCCGGCaGGAccucggcgcgaucGCGCGCa -3'
miRNA:   3'- cCGCGCCGCa----GGCCGaCCU-------------UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 5081 0.77 0.068716
Target:  5'- cGGCGCGuGCGaCCGGCUcGGcgguGCGCGCc -3'
miRNA:   3'- -CCGCGC-CGCaGGCCGA-CCu---UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 51192 0.74 0.114374
Target:  5'- -aCGCGGCGgCCcGCUGGAGcCGCGCg -3'
miRNA:   3'- ccGCGCCGCaGGcCGACCUU-GCGCGa -5'
23950 5' -62.5 NC_005262.1 + 44131 0.73 0.148619
Target:  5'- cGGCGUucccGCGuUCCGGCcGGAcGCGCGCg -3'
miRNA:   3'- -CCGCGc---CGC-AGGCCGaCCU-UGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 60743 0.73 0.148619
Target:  5'- uGGCuCGGCGaa-GGCUGGGagACGCGCUc -3'
miRNA:   3'- -CCGcGCCGCaggCCGACCU--UGCGCGA- -5'
23950 5' -62.5 NC_005262.1 + 12594 0.72 0.1779
Target:  5'- cGGCGaGGCGUCgCGGau-GAGCGCGCc -3'
miRNA:   3'- -CCGCgCCGCAG-GCCgacCUUGCGCGa -5'
23950 5' -62.5 NC_005262.1 + 53452 0.71 0.196848
Target:  5'- aGCGCGGCG-CCGGCgucgaGGAcaACgGCGUg -3'
miRNA:   3'- cCGCGCCGCaGGCCGa----CCU--UG-CGCGa -5'
23950 5' -62.5 NC_005262.1 + 7013 0.71 0.206452
Target:  5'- aGCGCGGCGgcUUCGG-UGGAcgucagguccuucGCGCGCa -3'
miRNA:   3'- cCGCGCCGC--AGGCCgACCU-------------UGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.