Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23953 | 5' | -60 | NC_005262.1 | + | 34738 | 0.69 | 0.391457 |
Target: 5'- ---gGUCGAGCcgaacacgGUGCgCGUCgugCCGGCg -3' miRNA: 3'- ccuaCGGCUCG--------CACGgGCAGa--GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 34244 | 0.69 | 0.391457 |
Target: 5'- uGGgcGCCGAGUacaugaacGUGCUCGUCUCUa-- -3' miRNA: 3'- -CCuaCGGCUCG--------CACGGGCAGAGGccg -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 33165 | 0.68 | 0.400104 |
Target: 5'- cGGGcaccuUGCCGAGCGUcggcggcgGCUCGaUCUUCGcGCc -3' miRNA: 3'- -CCU-----ACGGCUCGCA--------CGGGC-AGAGGC-CG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 12061 | 0.68 | 0.408871 |
Target: 5'- --uUGCCGAGC-UGgUCGaucagCUCCGGCu -3' miRNA: 3'- ccuACGGCUCGcACgGGCa----GAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 6721 | 0.68 | 0.42676 |
Target: 5'- uGAUGCCGGGCccGUGCuuGUCgaacaUCuCGcGCg -3' miRNA: 3'- cCUACGGCUCG--CACGggCAG-----AG-GC-CG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 43233 | 0.68 | 0.42676 |
Target: 5'- ---cGCCGGGC-UGCUCGUCU-UGGCc -3' miRNA: 3'- ccuaCGGCUCGcACGGGCAGAgGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 42092 | 0.68 | 0.435878 |
Target: 5'- --uUGCCGAucuGCGUGCCCG-CguacagcagCgCGGCg -3' miRNA: 3'- ccuACGGCU---CGCACGGGCaGa--------G-GCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 46849 | 0.68 | 0.435878 |
Target: 5'- ---cGCCGAGCGUGCUgGacuUCUUCcGCa -3' miRNA: 3'- ccuaCGGCUCGCACGGgC---AGAGGcCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 52386 | 0.68 | 0.435878 |
Target: 5'- cGGcgGCCcGGCGcgGCgCGgCUUCGGCg -3' miRNA: 3'- -CCuaCGGcUCGCa-CGgGCaGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 25903 | 0.68 | 0.442326 |
Target: 5'- cGAUGCCGAGCagcgcgcaugguacGUcGCCaCGcgcgacgccgacUUUCCGGCa -3' miRNA: 3'- cCUACGGCUCG--------------CA-CGG-GC------------AGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 35685 | 0.67 | 0.454443 |
Target: 5'- ---cGUCGAGCGgGCacggaagcauCCG-CUCCGGCg -3' miRNA: 3'- ccuaCGGCUCGCaCG----------GGCaGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 28637 | 0.67 | 0.463885 |
Target: 5'- --uUGCCGccAGCGUcGCCCGga-UCGGCg -3' miRNA: 3'- ccuACGGC--UCGCA-CGGGCagaGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 32874 | 0.67 | 0.46769 |
Target: 5'- ---cGCCGAGCuGUucGCCgCGUCgaacgucggccaagCCGGCg -3' miRNA: 3'- ccuaCGGCUCG-CA--CGG-GCAGa-------------GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 5685 | 0.67 | 0.486952 |
Target: 5'- gGGAgaggGCCgGAGCGgaggcaggugcgcuuUGCguagcgUCGUUUCCGGCa -3' miRNA: 3'- -CCUa---CGG-CUCGC---------------ACG------GGCAGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 33885 | 0.67 | 0.487926 |
Target: 5'- ---cGCCGAGCGUGgucgcaucgcccgaaCCGUCaucuuccugaagcgCCGGCg -3' miRNA: 3'- ccuaCGGCUCGCACg--------------GGCAGa-------------GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 17781 | 0.67 | 0.492804 |
Target: 5'- cGAgGCCGAGCGcaaagccaGCCUcaaUCCGGCa -3' miRNA: 3'- cCUaCGGCUCGCa-------CGGGcagAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 60833 | 0.66 | 0.511542 |
Target: 5'- cGAUGCCGGGCagcgugaGUGCCCGcC-CCa-- -3' miRNA: 3'- cCUACGGCUCG-------CACGGGCaGaGGccg -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 22115 | 0.66 | 0.512537 |
Target: 5'- aGAUGCCGA---UGCCgGUg-CCGGCg -3' miRNA: 3'- cCUACGGCUcgcACGGgCAgaGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 48091 | 0.66 | 0.522525 |
Target: 5'- ---cGUCGAGCGcauagcgcUGCUCGUCcgUCuCGGCg -3' miRNA: 3'- ccuaCGGCUCGC--------ACGGGCAG--AG-GCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 49176 | 0.66 | 0.522525 |
Target: 5'- ---gGCCGcAGCG-GCgCGcacggcgaugaUCUCCGGCa -3' miRNA: 3'- ccuaCGGC-UCGCaCGgGC-----------AGAGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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