miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 12967 1.02 0.001554
Target:  5'- gGGAUGCC-AGCGUGCCCGUCUCCGGCg -3'
miRNA:   3'- -CCUACGGcUCGCACGGGCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 16574 0.77 0.119306
Target:  5'- cGGAUGCCGAGCaggcgcguGUGCUgGUCgaggCGGCg -3'
miRNA:   3'- -CCUACGGCUCG--------CACGGgCAGag--GCCG- -5'
23953 5' -60 NC_005262.1 + 25341 0.76 0.122523
Target:  5'- aGGAUacgGCgaCGAGCGUG-CCGUCgUCCGGCg -3'
miRNA:   3'- -CCUA---CG--GCUCGCACgGGCAG-AGGCCG- -5'
23953 5' -60 NC_005262.1 + 15723 0.73 0.211267
Target:  5'- ---cGCCGGGCG-GCUCGUCg-CGGCa -3'
miRNA:   3'- ccuaCGGCUCGCaCGGGCAGagGCCG- -5'
23953 5' -60 NC_005262.1 + 59112 0.72 0.227743
Target:  5'- uGGAUGCC--GCG-GCCCGa-UCCGGCc -3'
miRNA:   3'- -CCUACGGcuCGCaCGGGCagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 23674 0.72 0.233472
Target:  5'- uGGAUGCCGcccgagcggcGCGUGUggGUCUaCCGGCg -3'
miRNA:   3'- -CCUACGGCu---------CGCACGggCAGA-GGCCG- -5'
23953 5' -60 NC_005262.1 + 9470 0.72 0.245293
Target:  5'- aGGUGCCGAGCGcGUCgaugaCGUC-CUGGCg -3'
miRNA:   3'- cCUACGGCUCGCaCGG-----GCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 23149 0.71 0.263951
Target:  5'- cGGGUcGCUGAcGcCGUGCCCGUggCCGGg -3'
miRNA:   3'- -CCUA-CGGCU-C-GCACGGGCAgaGGCCg -5'
23953 5' -60 NC_005262.1 + 26348 0.71 0.290598
Target:  5'- uGAUGCCGGGCGUGCgguUCGagaUCgugCCGcGCa -3'
miRNA:   3'- cCUACGGCUCGCACG---GGC---AGa--GGC-CG- -5'
23953 5' -60 NC_005262.1 + 34006 0.71 0.297581
Target:  5'- aGGuUGCUGGG-GUGCCgCGcCgUCCGGCa -3'
miRNA:   3'- -CCuACGGCUCgCACGG-GCaG-AGGCCG- -5'
23953 5' -60 NC_005262.1 + 13717 0.7 0.304693
Target:  5'- cGGGUucgGUCGgcgcAGCG-GCCuuCGUCUCCGGCu -3'
miRNA:   3'- -CCUA---CGGC----UCGCaCGG--GCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 16044 0.7 0.304693
Target:  5'- cGAUGCCGGGUucGCCgCGg--CCGGCg -3'
miRNA:   3'- cCUACGGCUCGcaCGG-GCagaGGCCG- -5'
23953 5' -60 NC_005262.1 + 33702 0.7 0.311935
Target:  5'- cGGcgGCCG-GCGUgucgucGCCCuUCUugCCGGCg -3'
miRNA:   3'- -CCuaCGGCuCGCA------CGGGcAGA--GGCCG- -5'
23953 5' -60 NC_005262.1 + 49751 0.7 0.319308
Target:  5'- cGAcGCCG-GCGgcgcccgcGCCCGaggCUCCGGCc -3'
miRNA:   3'- cCUaCGGCuCGCa-------CGGGCa--GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 42247 0.7 0.32681
Target:  5'- cGAUGCCGAGCGccgcGCUCa-CUgCGGCg -3'
miRNA:   3'- cCUACGGCUCGCa---CGGGcaGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 19109 0.7 0.334441
Target:  5'- cGAUGCCacguucggaucGGGCGcggGCgCGUCgCCGGCg -3'
miRNA:   3'- cCUACGG-----------CUCGCa--CGgGCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 17075 0.7 0.342203
Target:  5'- ---cGCCGAuagGCGcGCCCGUCgacgCGGCg -3'
miRNA:   3'- ccuaCGGCU---CGCaCGGGCAGag--GCCG- -5'
23953 5' -60 NC_005262.1 + 18076 0.69 0.350094
Target:  5'- gGGAUGCCGAaC-UGCUCGaUCacggCCGGCu -3'
miRNA:   3'- -CCUACGGCUcGcACGGGC-AGa---GGCCG- -5'
23953 5' -60 NC_005262.1 + 41593 0.69 0.36626
Target:  5'- --uUGUCGAGCGcgaGCCCGgcgUUCuCGGCu -3'
miRNA:   3'- ccuACGGCUCGCa--CGGGCa--GAG-GCCG- -5'
23953 5' -60 NC_005262.1 + 47852 0.69 0.372038
Target:  5'- uGAaGCCGAGCGUGUgcagcacuuccuccUCGcUCUgCGGCg -3'
miRNA:   3'- cCUaCGGCUCGCACG--------------GGC-AGAgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.