miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 5' -60 NC_005262.1 + 4878 0.66 0.532587
Target:  5'- --uUGCCGAGCGccgacucGaCCUG-CUUCGGCg -3'
miRNA:   3'- ccuACGGCUCGCa------C-GGGCaGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 5685 0.67 0.486952
Target:  5'- gGGAgaggGCCgGAGCGgaggcaggugcgcuuUGCguagcgUCGUUUCCGGCa -3'
miRNA:   3'- -CCUa---CGG-CUCGC---------------ACG------GGCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 6372 0.66 0.552911
Target:  5'- cGGUGCCgGAGCGUugucGgCCGcCUucUCGGCg -3'
miRNA:   3'- cCUACGG-CUCGCA----CgGGCaGA--GGCCG- -5'
23953 5' -60 NC_005262.1 + 6721 0.68 0.42676
Target:  5'- uGAUGCCGGGCccGUGCuuGUCgaacaUCuCGcGCg -3'
miRNA:   3'- cCUACGGCUCG--CACGggCAG-----AG-GC-CG- -5'
23953 5' -60 NC_005262.1 + 9470 0.72 0.245293
Target:  5'- aGGUGCCGAGCGcGUCgaugaCGUC-CUGGCg -3'
miRNA:   3'- cCUACGGCUCGCaCGG-----GCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 10400 0.66 0.542718
Target:  5'- -cGUGCCG-GCGuUGUCCuugaacgcgGUCUgCGGCa -3'
miRNA:   3'- ccUACGGCuCGC-ACGGG---------CAGAgGCCG- -5'
23953 5' -60 NC_005262.1 + 12061 0.68 0.408871
Target:  5'- --uUGCCGAGC-UGgUCGaucagCUCCGGCu -3'
miRNA:   3'- ccuACGGCUCGcACgGGCa----GAGGCCG- -5'
23953 5' -60 NC_005262.1 + 12793 0.66 0.552911
Target:  5'- cGGUcGCCGgucgcuuccuuGGCcUGCUCGaccuUCUCCGGCg -3'
miRNA:   3'- cCUA-CGGC-----------UCGcACGGGC----AGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 12967 1.02 0.001554
Target:  5'- gGGAUGCC-AGCGUGCCCGUCUCCGGCg -3'
miRNA:   3'- -CCUACGGcUCGCACGGGCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 13717 0.7 0.304693
Target:  5'- cGGGUucgGUCGgcgcAGCG-GCCuuCGUCUCCGGCu -3'
miRNA:   3'- -CCUA---CGGC----UCGCaCGG--GCAGAGGCCG- -5'
23953 5' -60 NC_005262.1 + 15723 0.73 0.211267
Target:  5'- ---cGCCGGGCG-GCUCGUCg-CGGCa -3'
miRNA:   3'- ccuaCGGCUCGCaCGGGCAGagGCCG- -5'
23953 5' -60 NC_005262.1 + 16044 0.7 0.304693
Target:  5'- cGAUGCCGGGUucGCCgCGg--CCGGCg -3'
miRNA:   3'- cCUACGGCUCGcaCGG-GCagaGGCCG- -5'
23953 5' -60 NC_005262.1 + 16574 0.77 0.119306
Target:  5'- cGGAUGCCGAGCaggcgcguGUGCUgGUCgaggCGGCg -3'
miRNA:   3'- -CCUACGGCUCG--------CACGGgCAGag--GCCG- -5'
23953 5' -60 NC_005262.1 + 17075 0.7 0.342203
Target:  5'- ---cGCCGAuagGCGcGCCCGUCgacgCGGCg -3'
miRNA:   3'- ccuaCGGCU---CGCaCGGGCAGag--GCCG- -5'
23953 5' -60 NC_005262.1 + 17781 0.67 0.492804
Target:  5'- cGAgGCCGAGCGcaaagccaGCCUcaaUCCGGCa -3'
miRNA:   3'- cCUaCGGCUCGCa-------CGGGcagAGGCCG- -5'
23953 5' -60 NC_005262.1 + 18076 0.69 0.350094
Target:  5'- gGGAUGCCGAaC-UGCUCGaUCacggCCGGCu -3'
miRNA:   3'- -CCUACGGCUcGcACGGGC-AGa---GGCCG- -5'
23953 5' -60 NC_005262.1 + 19109 0.7 0.334441
Target:  5'- cGAUGCCacguucggaucGGGCGcggGCgCGUCgCCGGCg -3'
miRNA:   3'- cCUACGG-----------CUCGCa--CGgGCAGaGGCCG- -5'
23953 5' -60 NC_005262.1 + 22115 0.66 0.512537
Target:  5'- aGAUGCCGA---UGCCgGUg-CCGGCg -3'
miRNA:   3'- cCUACGGCUcgcACGGgCAgaGGCCG- -5'
23953 5' -60 NC_005262.1 + 23149 0.71 0.263951
Target:  5'- cGGGUcGCUGAcGcCGUGCCCGUggCCGGg -3'
miRNA:   3'- -CCUA-CGGCU-C-GCACGGGCAgaGGCCg -5'
23953 5' -60 NC_005262.1 + 23674 0.72 0.233472
Target:  5'- uGGAUGCCGcccgagcggcGCGUGUggGUCUaCCGGCg -3'
miRNA:   3'- -CCUACGGCu---------CGCACGggCAGA-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.