Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23953 | 5' | -60 | NC_005262.1 | + | 16574 | 0.77 | 0.119306 |
Target: 5'- cGGAUGCCGAGCaggcgcguGUGCUgGUCgaggCGGCg -3' miRNA: 3'- -CCUACGGCUCG--------CACGGgCAGag--GCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 35685 | 0.67 | 0.454443 |
Target: 5'- ---cGUCGAGCGgGCacggaagcauCCG-CUCCGGCg -3' miRNA: 3'- ccuaCGGCUCGCaCG----------GGCaGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 32874 | 0.67 | 0.46769 |
Target: 5'- ---cGCCGAGCuGUucGCCgCGUCgaacgucggccaagCCGGCg -3' miRNA: 3'- ccuaCGGCUCG-CA--CGG-GCAGa-------------GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 17781 | 0.67 | 0.492804 |
Target: 5'- cGAgGCCGAGCGcaaagccaGCCUcaaUCCGGCa -3' miRNA: 3'- cCUaCGGCUCGCa-------CGGGcagAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 45224 | 0.66 | 0.522525 |
Target: 5'- ---cGCCGGGCucgGCCUGaacgCCGGCa -3' miRNA: 3'- ccuaCGGCUCGca-CGGGCaga-GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 49176 | 0.66 | 0.522525 |
Target: 5'- ---gGCCGcAGCG-GCgCGcacggcgaugaUCUCCGGCa -3' miRNA: 3'- ccuaCGGC-UCGCaCGgGC-----------AGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 4878 | 0.66 | 0.532587 |
Target: 5'- --uUGCCGAGCGccgacucGaCCUG-CUUCGGCg -3' miRNA: 3'- ccuACGGCUCGCa------C-GGGCaGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 55634 | 0.66 | 0.542718 |
Target: 5'- aGAaGCCGGGCcgcgcgcucGUGgCCGcgUCCGGCa -3' miRNA: 3'- cCUaCGGCUCG---------CACgGGCagAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 59696 | 0.66 | 0.552911 |
Target: 5'- cGGcGUGCCGccacGCGggcGCUaCGUCgCCGGCa -3' miRNA: 3'- -CC-UACGGCu---CGCa--CGG-GCAGaGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 25903 | 0.68 | 0.442326 |
Target: 5'- cGAUGCCGAGCagcgcgcaugguacGUcGCCaCGcgcgacgccgacUUUCCGGCa -3' miRNA: 3'- cCUACGGCUCG--------------CA-CGG-GC------------AGAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 46849 | 0.68 | 0.435878 |
Target: 5'- ---cGCCGAGCGUGCUgGacuUCUUCcGCa -3' miRNA: 3'- ccuaCGGCUCGCACGGgC---AGAGGcCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 23674 | 0.72 | 0.233472 |
Target: 5'- uGGAUGCCGcccgagcggcGCGUGUggGUCUaCCGGCg -3' miRNA: 3'- -CCUACGGCu---------CGCACGggCAGA-GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 26348 | 0.71 | 0.290598 |
Target: 5'- uGAUGCCGGGCGUGCgguUCGagaUCgugCCGcGCa -3' miRNA: 3'- cCUACGGCUCGCACG---GGC---AGa--GGC-CG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 49751 | 0.7 | 0.319308 |
Target: 5'- cGAcGCCG-GCGgcgcccgcGCCCGaggCUCCGGCc -3' miRNA: 3'- cCUaCGGCuCGCa-------CGGGCa--GAGGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 42247 | 0.7 | 0.32681 |
Target: 5'- cGAUGCCGAGCGccgcGCUCa-CUgCGGCg -3' miRNA: 3'- cCUACGGCUCGCa---CGGGcaGAgGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 17075 | 0.7 | 0.342203 |
Target: 5'- ---cGCCGAuagGCGcGCCCGUCgacgCGGCg -3' miRNA: 3'- ccuaCGGCU---CGCaCGGGCAGag--GCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 34738 | 0.69 | 0.391457 |
Target: 5'- ---gGUCGAGCcgaacacgGUGCgCGUCgugCCGGCg -3' miRNA: 3'- ccuaCGGCUCG--------CACGgGCAGa--GGCCG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 34244 | 0.69 | 0.391457 |
Target: 5'- uGGgcGCCGAGUacaugaacGUGCUCGUCUCUa-- -3' miRNA: 3'- -CCuaCGGCUCG--------CACGGGCAGAGGccg -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 6721 | 0.68 | 0.42676 |
Target: 5'- uGAUGCCGGGCccGUGCuuGUCgaacaUCuCGcGCg -3' miRNA: 3'- cCUACGGCUCG--CACGggCAG-----AG-GC-CG- -5' |
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23953 | 5' | -60 | NC_005262.1 | + | 25341 | 0.76 | 0.122523 |
Target: 5'- aGGAUacgGCgaCGAGCGUG-CCGUCgUCCGGCg -3' miRNA: 3'- -CCUA---CG--GCUCGCACgGGCAG-AGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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